Variant report

Variant	rs7434141
Chromosome Location	chr3:54331988-54331989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12374075	0.86[CHB][hapmap]
rs12374128	0.82[CHB][hapmap]
rs3934633	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs41277447	0.92[EUR][1000 genomes]
rs55715726	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55768606	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs55826666	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs55982339	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs56212431	0.88[ASN][1000 genomes]
rs56305246	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56411589	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57211759	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57711599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60921965	0.94[EUR][1000 genomes]
rs61027914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61566355	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62254144	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62254145	0.92[ASN][1000 genomes]
rs62254148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62254149	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62254159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62256061	0.91[EUR][1000 genomes]
rs62256085	0.91[EUR][1000 genomes]
rs62256091	0.92[EUR][1000 genomes]
rs62256099	0.91[EUR][1000 genomes]
rs6445639	1.00[YRI][hapmap]
rs6445640	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6445643	0.92[YRI][hapmap]
rs6445646	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs6769262	0.92[EUR][1000 genomes]
rs6792199	1.00[YRI][hapmap]
rs6804595	1.00[YRI][hapmap]
rs6807491	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6810291	0.84[EUR][1000 genomes]
rs7426971	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs7428097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7432978	1.00[YRI][hapmap]
rs7635568	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7649860	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54331000-54332200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr3:54331000-54332400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:54331000-54334200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:54331200-54332000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:54331800-54332600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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