Variant report

Variant	rs55715726
Chromosome Location	chr3:54328573-54328574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs3934633	0.88[ASN][1000 genomes]
rs41277447	0.91[EUR][1000 genomes]
rs55768606	0.90[ASN][1000 genomes]
rs55826666	0.90[ASN][1000 genomes]
rs55982339	0.90[ASN][1000 genomes]
rs56212431	0.90[ASN][1000 genomes]
rs56305246	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56411589	0.90[ASN][1000 genomes]
rs57211759	0.90[ASN][1000 genomes]
rs57711599	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60921965	0.93[EUR][1000 genomes]
rs61027914	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61566355	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62254144	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62254145	0.90[ASN][1000 genomes]
rs62254148	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62254149	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62254159	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256061	0.90[EUR][1000 genomes]
rs62256085	0.90[EUR][1000 genomes]
rs62256091	0.91[EUR][1000 genomes]
rs62256099	0.90[EUR][1000 genomes]
rs6445640	0.89[ASN][1000 genomes]
rs6445646	0.90[EUR][1000 genomes]
rs6769262	0.91[EUR][1000 genomes]
rs6810291	0.83[EUR][1000 genomes]
rs7426971	0.82[EUR][1000 genomes]
rs7428097	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7434141	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7635568	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv876806	chr3:54256648-54330010	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54328000-54328600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:54328200-54328600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:54328200-54328800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr3:54328200-54328800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:54328400-54328600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:54328400-54328800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:54328400-54329000	Enhancers	Pancreas	Pancrea

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