Variant report

Variant	rs60921965
Chromosome Location	chr3:54344932-54344933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs41277447	0.91[EUR][1000 genomes]
rs55715726	0.93[EUR][1000 genomes]
rs56305246	0.94[EUR][1000 genomes]
rs57711599	0.94[EUR][1000 genomes]
rs61027914	0.94[EUR][1000 genomes]
rs61566355	0.93[EUR][1000 genomes]
rs62254144	0.93[EUR][1000 genomes]
rs62254148	0.94[EUR][1000 genomes]
rs62254149	0.89[EUR][1000 genomes]
rs62254159	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62256061	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62256085	0.90[EUR][1000 genomes]
rs62256091	0.91[EUR][1000 genomes]
rs62256099	0.90[EUR][1000 genomes]
rs6445646	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6769262	0.91[EUR][1000 genomes]
rs6810291	0.83[EUR][1000 genomes]
rs7426971	0.82[EUR][1000 genomes]
rs7428097	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7434141	0.94[EUR][1000 genomes]
rs7635568	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54338400-54345400	Weak transcription	Fetal Lung	lung
2	chr3:54344000-54347600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:54344000-54360800	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links