Variant report

Variant	rs6810291
Chromosome Location	chr3:54357494-54357495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs41277447	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55715726	0.83[EUR][1000 genomes]
rs56305246	0.82[EUR][1000 genomes]
rs57711599	0.84[EUR][1000 genomes]
rs60921965	0.83[EUR][1000 genomes]
rs61027914	0.84[EUR][1000 genomes]
rs61566355	0.83[EUR][1000 genomes]
rs62254144	0.83[EUR][1000 genomes]
rs62254148	0.84[EUR][1000 genomes]
rs62254159	0.84[EUR][1000 genomes]
rs62256061	0.87[EUR][1000 genomes]
rs62256085	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62256091	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62256099	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6769262	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7426971	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7428097	0.86[EUR][1000 genomes]
rs7434141	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54344000-54360800	Weak transcription	Psoas Muscle	Psoas
2	chr3:54352800-54357600	Enhancers	Hela-S3	cervix
3	chr3:54356600-54370200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:54357200-54358400	Weak transcription	Fetal Kidney	kidney
5	chr3:54357200-54359200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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