Variant report

Variant	rs62259945
Chromosome Location	chr3:49434677-49434678
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49376642..49379582-chr3:49433592..49435487,2	K562	blood:
2	chr3:49433634..49436647-chr3:49437237..49441017,4	K562	blood:
3	chr3:49433245..49436928-chr3:49447117..49449989,7	K562	blood:
4	chr3:49433629..49436504-chr3:49455215..49456782,2	MCF-7	breast:
5	chr3:49376096..49378167-chr3:49432966..49435817,2	MCF-7	breast:
6	chr3:49433690..49436598-chr3:49447912..49450850,3	K562	blood:
7	chr3:49433997..49436498-chr3:49444708..49446631,2	K562	blood:
8	chr3:49377051..49379136-chr3:49433300..49435440,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145020	Chromatin interaction
ENSG00000114316	Chromatin interaction
ENSG00000145022	Chromatin interaction
ENSG00000067560	Chromatin interaction

rs_ID	r²[population]
rs41290716	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62259941	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62261251	1.00[AFR][1000 genomes]
rs62262670	1.00[AFR][1000 genomes]
rs62262676	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62262682	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62262683	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49396800-49438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:49399000-49448000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:49406000-49445200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:49413200-49435000	Weak transcription	Brain Angular Gyrus	brain
5	chr3:49413200-49441400	Weak transcription	Aorta	Aorta
6	chr3:49413200-49443000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:49413200-49447400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:49413400-49439000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:49413600-49441000	Weak transcription	Fetal Brain Female	brain
10	chr3:49416200-49435200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:49417800-49437800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:49422200-49443000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:49424200-49434800	Weak transcription	Brain Anterior Caudate	brain
14	chr3:49424200-49435000	Weak transcription	Stomach Mucosa	stomach
15	chr3:49424200-49443400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:49424400-49435000	Weak transcription	Small Intestine	intestine
17	chr3:49425400-49435000	Strong transcription	Fetal Intestine Small	intestine
18	chr3:49425800-49437800	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:49426000-49436600	Weak transcription	Gastric	stomach
20	chr3:49426000-49444000	Weak transcription	Esophagus	oesophagus
21	chr3:49426200-49437800	Weak transcription	Brain Substantia Nigra	brain
22	chr3:49426200-49443000	Weak transcription	NHLF	lung
23	chr3:49427000-49435000	Weak transcription	HSMMtube	muscle
24	chr3:49427000-49448400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:49427400-49435600	Strong transcription	Fetal Muscle Trunk	muscle
26	chr3:49428000-49436000	Strong transcription	GM12878-XiMat	blood
27	chr3:49428800-49438600	Strong transcription	Fetal Stomach	stomach
28	chr3:49429000-49437000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:49429000-49441800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:49429000-49447200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:49429400-49435400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:49429400-49436000	Strong transcription	Fetal Thymus	thymus
33	chr3:49429600-49435000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:49430000-49435800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr3:49430000-49436000	Strong transcription	Dnd41	blood
36	chr3:49430200-49435200	Weak transcription	Pancreas	Pancrea
37	chr3:49430200-49436000	Genic enhancers	Primary T cells fromperipheralblood	blood
38	chr3:49430400-49435000	Strong transcription	Fetal Muscle Leg	muscle
39	chr3:49430400-49435200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
40	chr3:49430600-49436000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:49430800-49439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr3:49431000-49435400	Weak transcription	Spleen	Spleen
43	chr3:49431000-49437800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr3:49431200-49447200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr3:49431800-49434800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:49431800-49434800	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr3:49431800-49434800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
48	chr3:49431800-49435000	Strong transcription	HSMM	muscle
49	chr3:49431800-49435600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr3:49431800-49436200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood

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