Variant report

Variant	rs62261251
Chromosome Location	chr3:49637049-49637050
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs41290716	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62259941	1.00[AFR][1000 genomes]
rs62259945	1.00[AFR][1000 genomes]
rs62260717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62262670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62262676	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62262682	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62262683	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62262727	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49631000-49639600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:49636000-49638000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:49636200-49638000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:49636600-49638000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:49636600-49638000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:49636800-49637600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:49636800-49638000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:49637000-49637800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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