Variant report

Variant	rs62267244
Chromosome Location	chr3:76093508-76093509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10514730	0.93[ASN][1000 genomes]
rs11918411	0.93[ASN][1000 genomes]
rs1463693	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17013690	0.93[ASN][1000 genomes]
rs17013699	0.93[ASN][1000 genomes]
rs17013710	0.93[ASN][1000 genomes]
rs17013716	0.93[ASN][1000 genomes]
rs17013719	0.93[ASN][1000 genomes]
rs17013720	0.93[ASN][1000 genomes]
rs17013722	0.93[ASN][1000 genomes]
rs17013724	0.93[ASN][1000 genomes]
rs2035702	0.93[ASN][1000 genomes]
rs2035704	0.98[ASN][1000 genomes]
rs2035705	0.98[ASN][1000 genomes]
rs2035706	0.98[ASN][1000 genomes]
rs2035707	0.98[ASN][1000 genomes]
rs2324465	0.93[ASN][1000 genomes]
rs2324466	0.93[ASN][1000 genomes]
rs28736892	0.93[ASN][1000 genomes]
rs55640002	0.93[ASN][1000 genomes]
rs55661213	0.98[ASN][1000 genomes]
rs55672201	0.88[ASN][1000 genomes]
rs55782277	0.93[ASN][1000 genomes]
rs55838120	0.98[ASN][1000 genomes]
rs56033332	0.93[ASN][1000 genomes]
rs56033889	0.93[ASN][1000 genomes]
rs56105298	0.98[ASN][1000 genomes]
rs56270120	0.93[ASN][1000 genomes]
rs56382476	0.93[ASN][1000 genomes]
rs56386344	0.88[ASN][1000 genomes]
rs58112396	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59410938	0.93[ASN][1000 genomes]
rs60072175	0.98[ASN][1000 genomes]
rs60466864	0.98[ASN][1000 genomes]
rs60519416	0.93[ASN][1000 genomes]
rs72892612	0.98[ASN][1000 genomes]
rs72892614	0.98[ASN][1000 genomes]
rs72892615	0.98[ASN][1000 genomes]
rs72892618	0.98[ASN][1000 genomes]
rs72892620	0.98[ASN][1000 genomes]
rs73841085	0.98[ASN][1000 genomes]
rs73841090	0.98[ASN][1000 genomes]
rs73841093	0.98[ASN][1000 genomes]
rs73841095	0.98[ASN][1000 genomes]
rs73841097	0.93[ASN][1000 genomes]
rs73841099	0.93[ASN][1000 genomes]
rs73841100	0.93[ASN][1000 genomes]
rs73841101	0.93[ASN][1000 genomes]
rs73841102	0.93[ASN][1000 genomes]
rs73842905	0.91[ASN][1000 genomes]
rs73842907	0.93[ASN][1000 genomes]
rs73842908	0.93[ASN][1000 genomes]
rs73842910	0.93[ASN][1000 genomes]
rs73842911	0.88[ASN][1000 genomes]
rs73842912	0.93[ASN][1000 genomes]
rs73842914	0.88[ASN][1000 genomes]
rs73842915	0.88[ASN][1000 genomes]
rs73842916	0.93[ASN][1000 genomes]
rs73842917	0.93[ASN][1000 genomes]
rs73842918	0.93[ASN][1000 genomes]
rs73842921	0.93[ASN][1000 genomes]
rs73842922	0.86[ASN][1000 genomes]
rs73842923	0.93[ASN][1000 genomes]
rs73842926	0.93[ASN][1000 genomes]
rs73842927	0.93[ASN][1000 genomes]
rs73842928	0.93[ASN][1000 genomes]
rs73842929	0.93[ASN][1000 genomes]
rs73842930	0.93[ASN][1000 genomes]
rs73842931	0.93[ASN][1000 genomes]
rs73842932	0.93[ASN][1000 genomes]
rs73842935	0.93[ASN][1000 genomes]
rs73842936	0.93[ASN][1000 genomes]
rs73842937	0.93[ASN][1000 genomes]
rs73842938	0.93[ASN][1000 genomes]
rs73842939	0.93[ASN][1000 genomes]
rs73842940	0.93[ASN][1000 genomes]
rs73842943	0.93[ASN][1000 genomes]
rs73842944	0.93[ASN][1000 genomes]
rs73842946	0.93[ASN][1000 genomes]
rs73842947	0.93[ASN][1000 genomes]
rs73842948	0.93[ASN][1000 genomes]
rs73842949	0.93[ASN][1000 genomes]
rs73842950	0.93[ASN][1000 genomes]
rs73842952	0.93[ASN][1000 genomes]
rs73842953	0.93[ASN][1000 genomes]
rs73842964	0.93[ASN][1000 genomes]
rs73842965	0.93[ASN][1000 genomes]
rs73842966	0.93[ASN][1000 genomes]
rs73842972	0.93[ASN][1000 genomes]
rs7609917	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763279	chr3:75958155-76107685	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876995	chr3:76015252-76114539	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1012705	chr3:76047819-76276542	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv998038	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536591	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1007586	chr3:76053664-76280612	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv979847	chr3:76058868-76143057	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv999868	chr3:76068393-76274977	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv869827	chr3:76074846-76142916	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2760774	chr3:76076446-76097994	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv432458	chr3:76077110-76119510	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv818152	chr3:76077143-76094221	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2757876	chr3:76077290-76167295	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3462052	chr3:76083579-76096297	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3462049	chr3:76083632-76096137	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3462050	chr3:76083641-76096126	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3462053	chr3:76083641-76096126	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv517731	chr3:76083946-76094221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv2422055	chr3:76083946-76096571	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv518802	chr3:76083946-76101757	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1009175	chr3:76084525-76103687	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv999298	chr3:76084525-76105554	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:76089000-76095400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:76089200-76093800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:76089200-76094400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:76089800-76094600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:76090200-76094200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:76090400-76099600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:76090600-76099800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:76090800-76094000	Weak transcription	NH-A	brain
9	chr3:76091000-76094400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:76091200-76093800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:76091200-76094000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:76092000-76094200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:76092400-76094000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:76092400-76094200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr3:76093200-76093600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:76093200-76093600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr3:76093200-76094000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr3:76093200-76094000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr3:76093200-76094600	Enhancers	Aorta	Aorta
20	chr3:76093400-76094200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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