Variant report

Variant	rs72892618
Chromosome Location	chr3:76096100-76096101
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10514730	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11918411	0.95[ASN][1000 genomes]
rs1463693	1.00[ASN][1000 genomes]
rs17013690	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013699	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013710	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013713	1.00[EUR][1000 genomes]
rs17013716	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013719	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013720	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013722	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013724	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2035702	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2035704	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035706	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324465	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2324466	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28736892	0.95[ASN][1000 genomes]
rs55640002	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55661213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55672201	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55782277	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55838120	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56033332	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56033889	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56105298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56270120	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56382476	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56386344	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58112396	1.00[ASN][1000 genomes]
rs59410938	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60072175	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60466864	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60519416	0.95[ASN][1000 genomes]
rs62267244	0.98[ASN][1000 genomes]
rs72892612	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892615	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73841085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73841090	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73841093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73841095	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73841097	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73841099	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73841100	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73841101	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73841102	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842905	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73842907	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842908	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842910	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842911	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842912	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842914	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842915	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842916	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842917	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842918	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842921	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842922	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73842923	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842925	1.00[EUR][1000 genomes]
rs73842926	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842927	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842928	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842929	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842930	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842931	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842932	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842935	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842936	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842937	0.95[ASN][1000 genomes]
rs73842938	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842939	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842940	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842943	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842944	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842946	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842947	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842948	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842949	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842950	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842952	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842953	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842964	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842965	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842966	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842972	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73842984	0.83[EUR][1000 genomes]
rs7609917	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763279	chr3:75958155-76107685	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876995	chr3:76015252-76114539	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1012705	chr3:76047819-76276542	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv998038	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536591	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1007586	chr3:76053664-76280612	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv979847	chr3:76058868-76143057	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv999868	chr3:76068393-76274977	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv869827	chr3:76074846-76142916	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2760774	chr3:76076446-76097994	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv432458	chr3:76077110-76119510	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2757876	chr3:76077290-76167295	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3462052	chr3:76083579-76096297	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3462049	chr3:76083632-76096137	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3462050	chr3:76083641-76096126	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3462053	chr3:76083641-76096126	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv2422055	chr3:76083946-76096571	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv518802	chr3:76083946-76101757	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1009175	chr3:76084525-76103687	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv999298	chr3:76084525-76105554	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv876996	chr3:76094221-76131251	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:76090400-76099600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:76090600-76099800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:76094200-76097200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:76094200-76099000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:76094200-76099600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:76094200-76101200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:76094400-76096800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:76094600-76096600	Weak transcription	Aorta	Aorta
9	chr3:76094600-76099600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:76094800-76099600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:76095000-76111000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:76095400-76096800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:76095400-76099400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links