Variant report

Variant	rs17013690
Chromosome Location	chr3:76088327-76088328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10514730	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11918411	0.90[ASN][1000 genomes]
rs1463693	0.95[ASN][1000 genomes]
rs17013699	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17013710	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17013713	1.00[EUR][1000 genomes]
rs17013716	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17013719	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17013720	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17013722	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17013724	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2035702	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2035704	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2035705	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2035706	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2035707	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2324465	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2324466	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28736892	0.90[ASN][1000 genomes]
rs55640002	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55661213	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55672201	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55782277	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55838120	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56033332	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56033889	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56105298	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56270120	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56382476	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56386344	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58112396	0.95[ASN][1000 genomes]
rs59410938	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60072175	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60466864	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60519416	0.90[ASN][1000 genomes]
rs62267244	0.93[ASN][1000 genomes]
rs72892612	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72892614	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72892615	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72892618	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72892620	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73841085	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73841090	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73841093	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73841095	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73841097	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73841099	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73841100	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73841101	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73841102	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842905	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73842907	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842908	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842910	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842911	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73842912	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842914	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73842915	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73842916	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842917	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842918	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842921	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842922	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73842923	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842925	1.00[EUR][1000 genomes]
rs73842926	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842927	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842928	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842929	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842930	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842931	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842932	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842935	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842936	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842937	0.90[ASN][1000 genomes]
rs73842938	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842939	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842940	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842943	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842944	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842946	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842947	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842948	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842949	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842950	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842952	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842953	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842964	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842965	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842966	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842972	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73842984	0.83[EUR][1000 genomes]
rs7609917	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763279	chr3:75958155-76107685	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876995	chr3:76015252-76114539	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1012705	chr3:76047819-76276542	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv998038	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536591	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1007586	chr3:76053664-76280612	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv979847	chr3:76058868-76143057	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv999868	chr3:76068393-76274977	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv869827	chr3:76074846-76142916	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2760774	chr3:76076446-76097994	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv432458	chr3:76077110-76119510	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv818152	chr3:76077143-76094221	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2757876	chr3:76077290-76167295	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3462052	chr3:76083579-76096297	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3462049	chr3:76083632-76096137	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3462050	chr3:76083641-76096126	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3462053	chr3:76083641-76096126	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv517731	chr3:76083946-76094221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv2422055	chr3:76083946-76096571	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv518802	chr3:76083946-76101757	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1009175	chr3:76084525-76103687	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv999298	chr3:76084525-76105554	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv967182	chr3:76088251-76092560	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:76085000-76092400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:76086800-76089600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:76087000-76088400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:76087000-76089600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:76087200-76088600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:76087400-76088400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:76087400-76089200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:76087600-76090600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:76087800-76088400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr3:76087800-76088400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:76087800-76088400	Enhancers	Fetal Lung	lung
12	chr3:76087800-76088600	Enhancers	HMEC	breast
13	chr3:76087800-76089000	Enhancers	NH-A	brain
14	chr3:76087800-76089200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:76088000-76088400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:76088000-76089200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:76088000-76089200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:76088000-76090400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:76088000-76092000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:76088000-76092000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:76088200-76088400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr3:76088200-76089000	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr3:76088200-76089200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:76088200-76089200	Enhancers	NHEK	skin
25	chr3:76088200-76092400	Weak transcription	H9 Cell Line	embryonic stem cell

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