Variant report

Variant	rs73842984
Chromosome Location	chr3:76145663-76145664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10514730	0.83[EUR][1000 genomes]
rs17013690	0.83[EUR][1000 genomes]
rs17013699	0.83[EUR][1000 genomes]
rs17013710	0.83[EUR][1000 genomes]
rs17013713	0.83[EUR][1000 genomes]
rs17013716	0.83[EUR][1000 genomes]
rs17013719	0.83[EUR][1000 genomes]
rs17013720	0.83[EUR][1000 genomes]
rs17013722	0.83[EUR][1000 genomes]
rs17013724	0.83[EUR][1000 genomes]
rs2035702	0.83[EUR][1000 genomes]
rs2035704	0.83[EUR][1000 genomes]
rs2035705	0.83[EUR][1000 genomes]
rs2035706	0.83[EUR][1000 genomes]
rs2035707	0.83[EUR][1000 genomes]
rs2324465	0.83[EUR][1000 genomes]
rs2324466	0.83[EUR][1000 genomes]
rs28766103	0.96[ASN][1000 genomes]
rs28833184	0.96[ASN][1000 genomes]
rs28863513	0.96[ASN][1000 genomes]
rs55640002	0.83[EUR][1000 genomes]
rs55661213	0.83[EUR][1000 genomes]
rs55672201	0.83[EUR][1000 genomes]
rs55782277	0.83[EUR][1000 genomes]
rs55838120	0.83[EUR][1000 genomes]
rs56033332	0.83[EUR][1000 genomes]
rs56033889	0.83[EUR][1000 genomes]
rs56105298	0.83[EUR][1000 genomes]
rs56270120	0.83[EUR][1000 genomes]
rs56382476	0.83[EUR][1000 genomes]
rs56386344	0.83[EUR][1000 genomes]
rs59410938	0.83[EUR][1000 genomes]
rs60072175	0.83[EUR][1000 genomes]
rs60466864	0.83[EUR][1000 genomes]
rs72892612	0.83[EUR][1000 genomes]
rs72892614	0.83[EUR][1000 genomes]
rs72892615	0.83[EUR][1000 genomes]
rs72892618	0.83[EUR][1000 genomes]
rs72892620	0.83[EUR][1000 genomes]
rs73841085	0.83[EUR][1000 genomes]
rs73841090	0.83[EUR][1000 genomes]
rs73841093	0.83[EUR][1000 genomes]
rs73841095	0.83[EUR][1000 genomes]
rs73841097	0.83[EUR][1000 genomes]
rs73841099	0.83[EUR][1000 genomes]
rs73841100	0.83[EUR][1000 genomes]
rs73841101	0.83[EUR][1000 genomes]
rs73841102	0.83[EUR][1000 genomes]
rs73842905	0.83[EUR][1000 genomes]
rs73842907	0.83[EUR][1000 genomes]
rs73842908	0.83[EUR][1000 genomes]
rs73842910	0.83[EUR][1000 genomes]
rs73842911	0.83[EUR][1000 genomes]
rs73842912	0.83[EUR][1000 genomes]
rs73842914	0.83[EUR][1000 genomes]
rs73842915	0.83[EUR][1000 genomes]
rs73842916	0.83[EUR][1000 genomes]
rs73842917	0.83[EUR][1000 genomes]
rs73842918	0.83[EUR][1000 genomes]
rs73842921	0.83[EUR][1000 genomes]
rs73842922	0.83[EUR][1000 genomes]
rs73842923	0.83[EUR][1000 genomes]
rs73842925	0.83[EUR][1000 genomes]
rs73842926	0.83[EUR][1000 genomes]
rs73842927	0.83[EUR][1000 genomes]
rs73842928	0.83[EUR][1000 genomes]
rs73842929	0.83[EUR][1000 genomes]
rs73842930	0.83[EUR][1000 genomes]
rs73842931	0.83[EUR][1000 genomes]
rs73842932	0.83[EUR][1000 genomes]
rs73842935	0.83[EUR][1000 genomes]
rs73842936	0.83[EUR][1000 genomes]
rs73842938	0.83[EUR][1000 genomes]
rs73842939	0.83[EUR][1000 genomes]
rs73842940	0.83[EUR][1000 genomes]
rs73842943	0.83[EUR][1000 genomes]
rs73842944	0.83[EUR][1000 genomes]
rs73842946	0.83[EUR][1000 genomes]
rs73842947	0.83[EUR][1000 genomes]
rs73842948	0.83[EUR][1000 genomes]
rs73842949	0.83[EUR][1000 genomes]
rs73842950	0.83[EUR][1000 genomes]
rs73842952	0.83[EUR][1000 genomes]
rs73842953	0.83[EUR][1000 genomes]
rs73842964	0.83[EUR][1000 genomes]
rs73842965	0.83[EUR][1000 genomes]
rs73842966	0.83[EUR][1000 genomes]
rs73842972	0.83[EUR][1000 genomes]
rs9851566	0.96[ASN][1000 genomes]
rs9851838	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012705	chr3:76047819-76276542	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998038	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv536591	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1007586	chr3:76053664-76280612	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999868	chr3:76068393-76274977	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2757876	chr3:76077290-76167295	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1004976	chr3:76098108-76218646	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv963334	chr3:76144827-76201280	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:76143400-76146400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:76143600-76148000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:76143800-76146000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:76143800-76148400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:76145200-76147600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:76145400-76146200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:76145600-76148200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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