Variant report

Variant	rs62295151
Chromosome Location	chr4:19769495-19769496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10516335	0.87[ASN][1000 genomes]
rs11721854	0.87[ASN][1000 genomes]
rs11721864	0.87[ASN][1000 genomes]
rs11722812	0.87[ASN][1000 genomes]
rs11930962	0.87[ASN][1000 genomes]
rs11936583	0.87[ASN][1000 genomes]
rs11939339	0.87[ASN][1000 genomes]
rs17511289	0.87[ASN][1000 genomes]
rs17511324	0.87[ASN][1000 genomes]
rs17511721	0.87[ASN][1000 genomes]
rs28629819	1.00[ASN][1000 genomes]
rs56182249	0.87[ASN][1000 genomes]
rs62295090	0.87[ASN][1000 genomes]
rs62295099	0.87[ASN][1000 genomes]
rs62295100	0.87[ASN][1000 genomes]
rs62295102	0.87[ASN][1000 genomes]
rs62295104	0.87[ASN][1000 genomes]
rs62295107	0.87[ASN][1000 genomes]
rs62295108	0.87[ASN][1000 genomes]
rs62295139	0.87[ASN][1000 genomes]
rs62295153	1.00[ASN][1000 genomes]
rs62296261	1.00[ASN][1000 genomes]
rs62296262	1.00[ASN][1000 genomes]
rs62296264	1.00[ASN][1000 genomes]
rs62296266	1.00[ASN][1000 genomes]
rs62296271	1.00[ASN][1000 genomes]
rs73236204	1.00[ASN][1000 genomes]
rs7675318	0.87[ASN][1000 genomes]
rs901927	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19769400-19781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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