Variant report

Variant	rs11936583
Chromosome Location	chr4:19741044-19741045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10516335	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721854	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11930962	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939339	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942433	0.93[EUR][1000 genomes]
rs17511289	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17511324	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17511721	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17570085	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17570168	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28629819	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4130540	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs56182249	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295090	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295099	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295100	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295102	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295104	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295107	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295108	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295139	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295151	0.87[ASN][1000 genomes]
rs62295153	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62296261	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62296262	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62296264	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62296266	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62296271	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62296887	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62296905	0.93[EUR][1000 genomes]
rs6848523	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6853029	0.93[EUR][1000 genomes]
rs73236204	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7665257	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7667493	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7675318	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901927	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19737400-19749600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:19740000-19742000	Enhancers	Dnd41	blood
3	chr4:19740400-19741400	Enhancers	Fetal Kidney	kidney
4	chr4:19740400-19741600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr4:19740600-19741200	Enhancers	NHDF-Ad	bronchial
6	chr4:19740600-19741400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:19740600-19741400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:19740600-19741600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:19740600-19741600	Enhancers	Fetal Stomach	stomach
10	chr4:19740600-19741600	Flanking Active TSS	HUVEC	blood vessel
11	chr4:19740600-19741600	Enhancers	NHEK	skin
12	chr4:19740600-19741600	Flanking Active TSS	Osteobl	bone
13	chr4:19740600-19741800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:19740600-19742000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:19740600-19742000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:19740800-19741200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:19740800-19741200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:19740800-19741200	Active TSS	Hela-S3	cervix
19	chr4:19740800-19741400	Active TSS	A549	lung
20	chr4:19740800-19741600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:19740800-19753600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:19741000-19741200	Enhancers	NHLF	lung
23	chr4:19741000-19741400	Enhancers	Primary B cells from cord blood	blood
24	chr4:19741000-19741400	Enhancers	Primary T cells from cord blood	blood
25	chr4:19741000-19741400	Flanking Active TSS	NH-A	brain
26	chr4:19741000-19741600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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