Variant report

Variant	rs62296905
Chromosome Location	chr4:19681722-19681723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10516335	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11721854	0.91[EUR][1000 genomes]
rs11721864	0.93[EUR][1000 genomes]
rs11722812	0.93[EUR][1000 genomes]
rs11930962	0.92[EUR][1000 genomes]
rs11936583	0.93[EUR][1000 genomes]
rs11939339	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11942433	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17511289	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17511324	0.83[EUR][1000 genomes]
rs17511721	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17570085	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17570168	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28629819	0.88[EUR][1000 genomes]
rs56182249	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62295090	0.91[EUR][1000 genomes]
rs62295099	0.92[EUR][1000 genomes]
rs62295100	0.92[EUR][1000 genomes]
rs62295102	0.92[EUR][1000 genomes]
rs62295104	0.92[EUR][1000 genomes]
rs62295107	0.92[EUR][1000 genomes]
rs62295108	0.92[EUR][1000 genomes]
rs62295139	0.92[EUR][1000 genomes]
rs62295153	0.88[EUR][1000 genomes]
rs62296261	0.88[EUR][1000 genomes]
rs62296262	0.88[EUR][1000 genomes]
rs62296264	0.88[EUR][1000 genomes]
rs62296266	0.88[EUR][1000 genomes]
rs62296271	0.88[EUR][1000 genomes]
rs62296870	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62296887	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6848523	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6853029	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73236204	0.89[EUR][1000 genomes]
rs7665257	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7666136	0.81[EUR][1000 genomes]
rs7667493	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7675318	0.93[EUR][1000 genomes]
rs7681473	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs901927	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19679200-19685400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:19680000-19684400	Enhancers	Dnd41	blood

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