Variant report

Variant	rs28629819
Chromosome Location	chr4:19778292-19778293
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10516335	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11721854	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11721864	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11722812	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11930962	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11936583	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11939339	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11942433	0.88[EUR][1000 genomes]
rs17511289	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17511324	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17511721	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17570085	0.87[EUR][1000 genomes]
rs17570168	0.88[EUR][1000 genomes]
rs56182249	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62295090	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62295099	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62295100	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62295102	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62295104	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62295107	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62295108	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62295139	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62295151	1.00[ASN][1000 genomes]
rs62295153	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296261	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296262	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296264	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296266	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296271	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296887	0.85[EUR][1000 genomes]
rs62296905	0.88[EUR][1000 genomes]
rs6848523	0.88[EUR][1000 genomes]
rs6853029	0.88[EUR][1000 genomes]
rs73236204	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7665257	0.94[EUR][1000 genomes]
rs7667493	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7675318	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs901927	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19769400-19781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:19776000-19778600	Enhancers	NHDF-Ad	bronchial
3	chr4:19776200-19778400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:19776200-19778600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:19776200-19779200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:19776400-19778600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:19776400-19778800	Enhancers	Osteobl	bone
8	chr4:19776400-19779000	Enhancers	NH-A	brain
9	chr4:19776400-19779200	Enhancers	HUVEC	blood vessel
10	chr4:19777400-19778400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:19777400-19778800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:19777400-19778800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr4:19777400-19779200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:19777600-19778600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:19777600-19778800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:19777600-19778800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:19777800-19778800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:19778000-19778400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:19778000-19778400	Flanking Active TSS	HMEC	breast
20	chr4:19778000-19778800	Weak transcription	Fetal Heart	heart
21	chr4:19778000-19779000	Enhancers	NHLF	lung
22	chr4:19778200-19778800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:19778200-19779000	Enhancers	Hela-S3	cervix

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