Variant report

Variant	rs62296605
Chromosome Location	chrX:155161627-155161628
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12498602	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12499641	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56002130	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62300469	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6846435	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532965	chrX:154418093-155226096	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv532967	chrX:154418093-155252027	Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv915940	chrX:154577793-155232907	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv534441	chrX:154664337-155251871	Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv869305	chrX:154739403-155190347	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv916736	chrX:154762193-155232894	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	esv3441367	chrX:154906586-155188122	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv3411323	chrX:154906586-155189683	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv529629	chrX:154908412-155181583	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv534220	chrX:154929220-155251871	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv532993	chrX:154946830-155251871	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
12	nsv491852	chrX:154974667-155208354	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
13	nsv532994	chrX:154974667-155226096	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
14	nsv497966	chrX:154974696-155226057	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
15	nsv915617	chrX:154974696-155232894	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
16	nsv995130	chrX:155004881-155232907	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
17	nsv532995	chrX:155011785-155196953	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a
18	nsv869161	chrX:155029751-155232907	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
19	nsv529953	chrX:155058022-155209034	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
20	nsv868959	chrX:155074305-155232907	Active TSS Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:155147800-155178800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chrX:155158200-155166400	Weak transcription	Gastric	stomach
3	chrX:155159600-155168400	Weak transcription	Brain Substantia Nigra	brain
4	chrX:155159800-155164600	Weak transcription	Pancreas	Pancrea
5	chrX:155159800-155172000	Weak transcription	Fetal Thymus	thymus
6	chrX:155159800-155174400	Weak transcription	Fetal Kidney	kidney
7	chrX:155159800-155175600	Weak transcription	Brain Hippocampus Middle	brain
8	chrX:155159800-155177600	Weak transcription	HSMM	muscle
9	chrX:155160000-155167000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chrX:155160000-155168000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chrX:155160000-155170000	Weak transcription	Adipose Nuclei	Adipose
12	chrX:155160000-155170600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chrX:155160000-155171200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chrX:155160000-155171800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chrX:155160000-155172000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chrX:155160000-155172200	Weak transcription	Dnd41	blood
17	chrX:155160000-155173200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chrX:155160000-155174800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chrX:155160000-155175200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chrX:155160000-155175200	Weak transcription	GM12878-XiMat	blood
21	chrX:155160000-155176000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chrX:155160000-155176200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chrX:155160000-155176400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chrX:155160000-155176400	Weak transcription	A549	lung
25	chrX:155160000-155176600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chrX:155160200-155162600	Weak transcription	Fetal Intestine Large	intestine
27	chrX:155160200-155165200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chrX:155160200-155165200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chrX:155160200-155165200	Weak transcription	Fetal Stomach	stomach
30	chrX:155160200-155165400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chrX:155160200-155167800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chrX:155160200-155169000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chrX:155160200-155169000	Weak transcription	K562	blood
34	chrX:155160200-155169800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chrX:155160200-155171400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chrX:155160200-155171400	Weak transcription	Placenta	Placenta
37	chrX:155160200-155172000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chrX:155160200-155172000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chrX:155160200-155173400	Weak transcription	Rectal Smooth Muscle	rectum
40	chrX:155160200-155174200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chrX:155160200-155174800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chrX:155160200-155175800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chrX:155160200-155175800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chrX:155160200-155177800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chrX:155160400-155165200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chrX:155160400-155169800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chrX:155160400-155171800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chrX:155160400-155176800	Weak transcription	Primary B cells from peripheral blood	blood
49	chrX:155160400-155179800	Weak transcription	Primary T cells from cord blood	blood

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