Variant report

Variant	rs62306364
Chromosome Location	chr4:90024793-90024794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:90023640..90025754-chr4:90032265..90034270,2	K562	blood:
2	chr4:90023640..90028371-chr4:90029997..90034270,7	K562	blood:

Variant related genes	Relation type
ENSG00000180346	Chromatin interaction
ENSG00000271359	Chromatin interaction
ENSG00000138640	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11097208	0.82[ASN][1000 genomes]
rs12640018	0.95[ASN][1000 genomes]
rs13138280	0.84[AMR][1000 genomes]
rs13148188	0.81[ASN][1000 genomes]
rs1398940	0.86[ASN][1000 genomes]
rs1398944	0.82[ASN][1000 genomes]
rs17015027	0.96[ASN][1000 genomes]
rs17015052	0.84[ASN][1000 genomes]
rs1708668	0.90[ASN][1000 genomes]
rs1708669	0.84[ASN][1000 genomes]
rs1708670	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1708681	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1795722	0.84[ASN][1000 genomes]
rs1795727	0.91[ASN][1000 genomes]
rs1795729	0.87[ASN][1000 genomes]
rs1795734	0.86[ASN][1000 genomes]
rs1795738	0.84[ASN][1000 genomes]
rs1849597	0.86[ASN][1000 genomes]
rs1921684	0.82[ASN][1000 genomes]
rs1961979	0.82[ASN][1000 genomes]
rs2018779	0.90[ASN][1000 genomes]
rs2090031	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2464514	0.84[ASN][1000 genomes]
rs2670623	0.86[ASN][1000 genomes]
rs2704571	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28600923	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28628620	0.84[ASN][1000 genomes]
rs2869971	0.82[ASN][1000 genomes]
rs2869972	0.82[ASN][1000 genomes]
rs28712360	0.82[ASN][1000 genomes]
rs2904261	0.82[ASN][1000 genomes]
rs34845187	0.84[AMR][1000 genomes]
rs35624987	0.84[AMR][1000 genomes]
rs4285052	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4450885	0.82[ASN][1000 genomes]
rs4642211	0.84[AMR][1000 genomes]
rs4693981	0.80[ASN][1000 genomes]
rs59924504	0.82[ASN][1000 genomes]
rs60618725	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62306363	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62306390	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62306391	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62306397	0.81[ASN][1000 genomes]
rs6821678	0.82[ASN][1000 genomes]
rs6852373	0.86[ASN][1000 genomes]
rs6853480	0.82[ASN][1000 genomes]
rs72877642	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7656238	0.82[ASN][1000 genomes]
rs7658455	0.82[ASN][1000 genomes]
rs7659904	0.82[ASN][1000 genomes]
rs7660314	0.82[ASN][1000 genomes]
rs7680864	0.82[ASN][1000 genomes]
rs7692291	0.82[ASN][1000 genomes]
rs9307061	0.82[ASN][1000 genomes]
rs9991237	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90017200-90031600	Weak transcription	Right Atrium	heart
2	chr4:90021000-90029800	Weak transcription	Primary T cells from cord blood	blood
3	chr4:90023200-90026400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr4:90024200-90031800	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links