The 2.0 version of rSNPBase

Variant report

Variant rs1795729
Chromosome Location chr4:89937870-89937871
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:89903000-89957200 Weak transcription HSMM muscle
2 chr4:89912200-89943800 Weak transcription Psoas Muscle Psoas
3 chr4:89913400-89944000 Weak transcription Gastric stomach
4 chr4:89921000-89950600 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr4:89922600-89949800 Weak transcription HMEC breast
6 chr4:89922800-89945600 Weak transcription A549 lung
7 chr4:89923400-89939400 Weak transcription Primary T cells from cord blood blood
8 chr4:89923600-89945600 Weak transcription Rectal Smooth Muscle rectum
9 chr4:89923800-89943800 Weak transcription Right Atrium heart
10 chr4:89923800-89944400 Weak transcription Colon Smooth Muscle Colon
11 chr4:89925600-89939400 Weak transcription Aorta Aorta
12 chr4:89926400-89949600 Weak transcription Left Ventricle heart
13 chr4:89926600-89941000 Weak transcription Esophagus oesophagus
14 chr4:89926800-89951400 Weak transcription Right Ventricle heart
15 chr4:89928400-89940000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr4:89928600-89941600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr4:89928800-89939200 Weak transcription Stomach Smooth Muscle stomach
18 chr4:89929200-89939400 Weak transcription HSMMtube muscle
19 chr4:89930000-89942600 Weak transcription Brain Anterior Caudate brain
20 chr4:89931200-89944000 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr4:89931600-89943600 Weak transcription Small Intestine intestine
22 chr4:89931600-89945400 Weak transcription Liver Liver
23 chr4:89931800-89939400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr4:89932200-89943800 Weak transcription Pancreas Pancrea
25 chr4:89932800-89939400 Weak transcription NH-A brain
26 chr4:89933600-89951400 Weak transcription NHLF lung
27 chr4:89933800-89941800 Weak transcription NHDF-Ad bronchial
28 chr4:89933800-89945400 Weak transcription Muscle Satellite Cultured Cells --
29 chr4:89934000-89945000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr4:89934200-89940200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr4:89934800-89938200 ZNF genes & repeats Primary hematopoietic stem cells blood
32 chr4:89934800-89941200 Strong transcription Fetal Lung lung
33 chr4:89934800-89941800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr4:89935200-89938000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr4:89935400-89939200 Weak transcription Fetal Muscle Trunk muscle
36 chr4:89935800-89938400 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
37 chr4:89936000-89938200 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr4:89936000-89938400 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
39 chr4:89936000-89938400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr4:89936000-89938600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr4:89936000-89939200 Strong transcription Fetal Kidney kidney
42 chr4:89936200-89938200 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr4:89936400-89938200 ZNF genes & repeats H9 Cell Line embryonic stem cell
44 chr4:89936400-89939400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr4:89936400-89939600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr4:89936400-89940800 Strong transcription Breast Myoepithelial Primary Cells Breast
47 chr4:89936400-89941200 Strong transcription Primary hematopoietic stem cells short term culture blood
48 chr4:89936400-89942200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr4:89936400-89943800 Weak transcription Lung lung
50 chr4:89936600-89938200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015