Variant report

Variant	rs2090031
Chromosome Location	chr4:90005855-90005856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10004888	0.81[AMR][1000 genomes]
rs10006121	0.80[AMR][1000 genomes]
rs10009019	0.80[AMR][1000 genomes]
rs10028596	0.81[AMR][1000 genomes]
rs10030965	0.80[AMR][1000 genomes]
rs10033484	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10470937	0.80[AMR][1000 genomes]
rs11097208	0.84[ASN][1000 genomes]
rs11737182	0.81[AMR][1000 genomes]
rs12512799	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12640018	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13148188	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1398940	0.88[ASN][1000 genomes]
rs1398944	0.80[ASN][1000 genomes]
rs16996143	0.81[AMR][1000 genomes]
rs17015027	0.93[ASN][1000 genomes]
rs17015052	0.82[ASN][1000 genomes]
rs1708668	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1708669	0.86[ASN][1000 genomes]
rs1708670	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1708681	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1795722	0.86[ASN][1000 genomes]
rs1795727	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1795729	0.89[ASN][1000 genomes]
rs1795734	0.88[ASN][1000 genomes]
rs1795738	0.86[ASN][1000 genomes]
rs1849597	0.88[ASN][1000 genomes]
rs1921683	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1921684	0.84[ASN][1000 genomes]
rs1961979	0.84[ASN][1000 genomes]
rs2018779	0.88[ASN][1000 genomes]
rs2464514	0.86[ASN][1000 genomes]
rs2670623	0.88[ASN][1000 genomes]
rs2704571	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2704573	0.81[AMR][1000 genomes]
rs2704574	0.81[AMR][1000 genomes]
rs28540701	0.81[AMR][1000 genomes]
rs28600923	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28628620	0.82[ASN][1000 genomes]
rs2869971	0.84[ASN][1000 genomes]
rs2869972	0.84[ASN][1000 genomes]
rs2869973	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28712360	0.84[ASN][1000 genomes]
rs2904261	0.84[ASN][1000 genomes]
rs35232147	0.81[AMR][1000 genomes]
rs35441198	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4285052	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4450885	0.84[ASN][1000 genomes]
rs4507326	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4693981	0.82[ASN][1000 genomes]
rs59924504	0.80[ASN][1000 genomes]
rs60618725	0.91[ASN][1000 genomes]
rs62306363	0.95[ASN][1000 genomes]
rs62306364	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62306390	0.89[ASN][1000 genomes]
rs62306391	0.91[ASN][1000 genomes]
rs6819725	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6821678	0.80[ASN][1000 genomes]
rs6827857	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6834787	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6844655	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6852373	0.88[ASN][1000 genomes]
rs6853480	0.80[ASN][1000 genomes]
rs72877642	0.91[ASN][1000 genomes]
rs7656238	0.84[ASN][1000 genomes]
rs7658455	0.80[ASN][1000 genomes]
rs7659904	0.84[ASN][1000 genomes]
rs7660314	0.84[ASN][1000 genomes]
rs7680864	0.84[ASN][1000 genomes]
rs7686954	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7692291	0.80[ASN][1000 genomes]
rs7692455	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7697075	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7697900	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7697921	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9307054	0.80[AMR][1000 genomes]
rs9307055	0.81[AMR][1000 genomes]
rs9307060	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9307061	0.84[ASN][1000 genomes]
rs9991237	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89996400-90009800	Weak transcription	Pancreas	Pancrea

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