Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11930303	0.82[AFR][1000 genomes]
rs11930418	0.82[AFR][1000 genomes]
rs11930452	0.82[AFR][1000 genomes]
rs11933046	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11936159	0.90[AFR][1000 genomes]
rs11940068	0.86[AFR][1000 genomes]
rs11942074	0.82[AFR][1000 genomes]
rs11945205	0.82[AFR][1000 genomes]
rs17032185	0.95[AFR][1000 genomes]
rs34185522	0.82[AFR][1000 genomes]
rs55980430	0.86[AFR][1000 genomes]
rs56028926	0.82[AFR][1000 genomes]
rs56062932	0.88[AFR][1000 genomes]
rs56385550	0.90[AFR][1000 genomes]
rs56718028	0.82[AFR][1000 genomes]
rs59247268	0.82[AFR][1000 genomes]
rs59629817	0.82[AFR][1000 genomes]
rs60245306	0.82[AFR][1000 genomes]
rs60709691	0.82[AFR][1000 genomes]
rs62322248	0.88[AFR][1000 genomes]
rs62323491	0.90[AFR][1000 genomes]
rs62323494	0.82[AFR][1000 genomes]
rs62327887	0.82[AFR][1000 genomes]
rs62327888	0.90[AFR][1000 genomes]
rs62327889	0.82[AFR][1000 genomes]
rs6830450	0.86[AFR][1000 genomes]
rs6855752	0.86[AFR][1000 genomes]
rs72690448	0.84[AFR][1000 genomes]
rs72690454	0.90[AFR][1000 genomes]
rs72690460	0.82[AFR][1000 genomes]
rs7685748	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103138400-103140600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:103139400-103140600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:103139600-103140800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:103139600-103141200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:103139600-103141400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:103139800-103140600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:103139800-103140800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:103139800-103140800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:103140000-103140600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:103140000-103140800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:103140000-103140800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr4:103140200-103140600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:103140400-103143600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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