Variant report

Variant	rs17032185
Chromosome Location	chr4:103151453-103151454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10489123	0.88[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11930303	0.86[AFR][1000 genomes]
rs11930418	0.86[AFR][1000 genomes]
rs11930452	0.86[AFR][1000 genomes]
rs11933046	0.85[AFR][1000 genomes]
rs11936159	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11940068	0.91[AFR][1000 genomes]
rs11942074	0.86[AFR][1000 genomes]
rs11945205	0.86[AFR][1000 genomes]
rs17824524	0.87[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2033899	0.87[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2298752	0.82[AFR][1000 genomes]
rs34185522	0.86[AFR][1000 genomes]
rs4588460	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs55866413	0.81[AFR][1000 genomes]
rs55980430	0.91[AFR][1000 genomes]
rs56028926	0.86[AFR][1000 genomes]
rs56062932	0.88[AFR][1000 genomes]
rs56215225	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56295373	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56385550	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56718028	0.86[AFR][1000 genomes]
rs59247268	0.86[AFR][1000 genomes]
rs59629817	0.86[AFR][1000 genomes]
rs60245306	0.86[AFR][1000 genomes]
rs60709691	0.86[AFR][1000 genomes]
rs62322247	0.95[AFR][1000 genomes]
rs62322248	0.88[AFR][1000 genomes]
rs62323491	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323493	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323494	0.86[AFR][1000 genomes]
rs62323537	0.81[AFR][1000 genomes]
rs62327887	0.86[AFR][1000 genomes]
rs62327888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62327889	0.86[AFR][1000 genomes]
rs62327912	0.82[AFR][1000 genomes]
rs62327945	0.82[ASN][1000 genomes]
rs62327946	0.82[ASN][1000 genomes]
rs6825874	0.88[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs6826958	0.88[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs6830450	0.91[AFR][1000 genomes]
rs6855752	0.91[AFR][1000 genomes]
rs72690448	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690454	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690460	0.86[AFR][1000 genomes]
rs72692221	0.82[ASN][1000 genomes]
rs7662378	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7672806	0.90[YRI][hapmap]
rs7681171	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7681239	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699542	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103151000-103152600	Enhancers	Pancreatic Islets	Pancreatic Islet

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