Variant report

Variant	rs62327888
Chromosome Location	chr4:103172311-103172312
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11930303	0.91[AFR][1000 genomes]
rs11930418	0.91[AFR][1000 genomes]
rs11930452	0.91[AFR][1000 genomes]
rs11933046	0.80[AFR][1000 genomes]
rs11936159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11940068	0.86[AFR][1000 genomes]
rs11942074	0.91[AFR][1000 genomes]
rs11945205	0.91[AFR][1000 genomes]
rs17032185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2298752	0.86[AFR][1000 genomes]
rs34185522	0.91[AFR][1000 genomes]
rs55980430	0.86[AFR][1000 genomes]
rs56028926	0.91[AFR][1000 genomes]
rs56062932	0.84[AFR][1000 genomes]
rs56215225	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56295373	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56385550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56718028	0.91[AFR][1000 genomes]
rs58379650	0.82[AFR][1000 genomes]
rs59247268	0.91[AFR][1000 genomes]
rs59629817	0.91[AFR][1000 genomes]
rs60245306	0.91[AFR][1000 genomes]
rs60709691	0.91[AFR][1000 genomes]
rs62322247	0.90[AFR][1000 genomes]
rs62322248	0.84[AFR][1000 genomes]
rs62323491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323493	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323494	0.91[AFR][1000 genomes]
rs62323537	0.85[AFR][1000 genomes]
rs62327887	0.91[AFR][1000 genomes]
rs62327889	0.91[AFR][1000 genomes]
rs62327912	0.86[AFR][1000 genomes]
rs6830450	0.86[AFR][1000 genomes]
rs6855752	0.86[AFR][1000 genomes]
rs72690448	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72690454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72690460	0.91[AFR][1000 genomes]
rs7662378	0.86[AFR][1000 genomes]
rs7672806	0.82[AFR][1000 genomes]
rs7681171	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7681239	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7685748	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008680	chr4:103153709-103206555	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1011868	chr4:103158581-103206555	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999012	chr4:103162076-103206555	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103169000-103172400	Weak transcription	NH-A	brain
2	chr4:103170800-103173000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:103172000-103179000	Weak transcription	Lung	lung

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