Variant report
| Variant | rs62323493 |
|---|---|
| Chromosome Location | chr4:103163326-103163327 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10489123 | 0.82[ASN][1000 genomes] |
| rs11936159 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17032185 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17824524 | 0.82[ASN][1000 genomes] |
| rs2033899 | 0.82[ASN][1000 genomes] |
| rs56215225 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56295373 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56385550 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62323491 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62327888 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62327945 | 0.82[ASN][1000 genomes] |
| rs62327946 | 0.82[ASN][1000 genomes] |
| rs6825874 | 0.82[ASN][1000 genomes] |
| rs6826958 | 0.82[ASN][1000 genomes] |
| rs72690448 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72690454 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72692221 | 0.82[ASN][1000 genomes] |
| rs7681171 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7681239 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7685748 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7699542 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869164 | chr4:102483189-103213842 | Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv428447 | chr4:103103730-103262107 | Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1008680 | chr4:103153709-103206555 | Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1011868 | chr4:103158581-103206555 | Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv999012 | chr4:103162076-103206555 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:103156000-103170200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr4:103161600-103166000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
