Variant report
| Variant | rs62325476 |
|---|---|
| Chromosome Location | chr4:99662849-99662850 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151247 | Chromatin interaction |
| ENSG00000238449 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11930633 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13110567 | 0.96[EUR][1000 genomes] |
| rs13135153 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17566763 | 0.92[EUR][1000 genomes] |
| rs1918738 | 0.90[EUR][1000 genomes] |
| rs34285632 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4129895 | 0.97[EUR][1000 genomes] |
| rs4699668 | 0.90[EUR][1000 genomes] |
| rs62325474 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv964077 | chr4:99662009-99663570 | Enhancers Weak transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
