Variant report

Variant	rs62332045
Chromosome Location	chr4:149211161-149211162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10021848	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11099690	0.81[ASN][1000 genomes]
rs17484454	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3846325	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3911846	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4260521	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4594704	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62332046	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62332049	0.81[ASN][1000 genomes]
rs62332051	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr4:149206400-149216600	Weak transcription	Right Atrium	heart
3	chr4:149206400-149231600	Weak transcription	Right Ventricle	heart
4	chr4:149207000-149211600	Enhancers	Fetal Heart	heart
5	chr4:149207200-149213600	Weak transcription	Liver	Liver
6	chr4:149208600-149214000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:149208800-149212000	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr4:149209600-149211200	Enhancers	Colon Smooth Muscle	Colon
9	chr4:149209600-149211200	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr4:149209600-149211400	Enhancers	Psoas Muscle	Psoas
11	chr4:149209600-149211600	Enhancers	Stomach Mucosa	stomach
12	chr4:149209800-149214600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr4:149209800-149216600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:149210000-149214800	Weak transcription	Ovary	ovary
15	chr4:149210000-149216600	Weak transcription	Pancreas	Pancrea
16	chr4:149210000-149220600	Weak transcription	Gastric	stomach
17	chr4:149210600-149211200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:149210600-149211200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr4:149210600-149211200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr4:149210600-149211200	Enhancers	Small Intestine	intestine
21	chr4:149210800-149211400	Enhancers	Fetal Muscle Leg	muscle
22	chr4:149210800-149211600	Enhancers	Fetal Intestine Small	intestine
23	chr4:149211000-149211200	Enhancers	Brain Anterior Caudate	brain
24	chr4:149211000-149211200	Enhancers	Fetal Lung	lung
25	chr4:149211000-149211200	Enhancers	Stomach Smooth Muscle	stomach
26	chr4:149211000-149211400	Enhancers	Fetal Intestine Large	intestine
27	chr4:149211000-149211400	Enhancers	Left Ventricle	heart
28	chr4:149211000-149211400	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr4:149211000-149211400	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr4:149211000-149213600	Weak transcription	Duodenum Mucosa	Duodenum

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