Variant report

Variant	rs4260521
Chromosome Location	chr4:149206522-149206523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10021848	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[LWK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11099690	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs12331321	0.91[CHB][hapmap]
rs1429915	0.82[CHB][hapmap]
rs17484454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1858416	0.91[CHB][hapmap]
rs3846318	0.82[CHB][hapmap]
rs3846320	0.91[CHB][hapmap]
rs3846323	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs3846325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3911846	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4594704	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62332045	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62332046	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6820304	0.82[CHB][hapmap]
rs6826213	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs6836191	0.82[CHB][hapmap]
rs6851669	1.00[CHB][hapmap]
rs7680420	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149192400-149209400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr4:149195200-149207600	Weak transcription	Brain Angular Gyrus	brain
4	chr4:149196800-149209600	Weak transcription	Pancreas	Pancrea
5	chr4:149199600-149209600	Weak transcription	Left Ventricle	heart
6	chr4:149202800-149206600	Enhancers	Fetal Heart	heart
7	chr4:149203600-149207000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr4:149204000-149208000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:149204000-149209600	Weak transcription	Aorta	Aorta
10	chr4:149204200-149208400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:149204200-149209400	Weak transcription	Colonic Mucosa	Colon
12	chr4:149204400-149206800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:149204400-149207400	Weak transcription	Brain Anterior Caudate	brain
14	chr4:149204800-149209200	Weak transcription	Small Intestine	intestine
15	chr4:149204800-149209600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:149204800-149210800	Weak transcription	Fetal Intestine Small	intestine
17	chr4:149205200-149207200	Enhancers	Liver	Liver
18	chr4:149205200-149209600	Weak transcription	Stomach Mucosa	stomach
19	chr4:149205400-149209600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:149205400-149209600	Weak transcription	Gastric	stomach
21	chr4:149205600-149209800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:149205600-149211000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr4:149206000-149207200	Weak transcription	Brain Germinal Matrix	brain
24	chr4:149206000-149209800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:149206000-149211000	Weak transcription	Fetal Intestine Large	intestine
26	chr4:149206000-149211000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr4:149206200-149207000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:149206200-149207200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:149206200-149207200	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:149206200-149207200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr4:149206200-149208600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr4:149206400-149207400	Weak transcription	Fetal Lung	lung
33	chr4:149206400-149207600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr4:149206400-149208000	Weak transcription	Ovary	ovary
35	chr4:149206400-149208200	Weak transcription	Brain Hippocampus Middle	brain
36	chr4:149206400-149208400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr4:149206400-149209200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr4:149206400-149209600	Weak transcription	Psoas Muscle	Psoas
39	chr4:149206400-149210800	Weak transcription	Fetal Muscle Leg	muscle
40	chr4:149206400-149216600	Weak transcription	Right Atrium	heart
41	chr4:149206400-149231600	Weak transcription	Right Ventricle	heart

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