Variant report

Variant	rs3846323
Chromosome Location	chr4:149203945-149203946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10021848	0.87[CEU][hapmap]
rs1429915	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs17484454	0.87[CEU][hapmap]
rs3846318	0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs3846320	0.86[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs3846325	0.84[CEU][hapmap]
rs3911846	0.87[CEU][hapmap]
rs4260521	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs6535595	0.86[ASN][1000 genomes]
rs6820304	0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs6825530	0.85[ASN][1000 genomes]
rs6836191	0.80[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149192400-149209400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr4:149195000-149204200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:149195200-149207600	Weak transcription	Brain Angular Gyrus	brain
5	chr4:149195600-149204000	Weak transcription	Brain Anterior Caudate	brain
6	chr4:149195800-149205000	Weak transcription	Gastric	stomach
7	chr4:149196800-149209600	Weak transcription	Pancreas	Pancrea
8	chr4:149199600-149209600	Weak transcription	Left Ventricle	heart
9	chr4:149202800-149206600	Enhancers	Fetal Heart	heart
10	chr4:149203200-149204400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:149203200-149206000	Enhancers	Fetal Intestine Large	intestine
12	chr4:149203200-149206400	Enhancers	Right Ventricle	heart
13	chr4:149203600-149204200	Enhancers	Psoas Muscle	Psoas
14	chr4:149203600-149204200	Enhancers	Rectal Smooth Muscle	rectum
15	chr4:149203600-149204400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr4:149203600-149204400	Enhancers	Brain Hippocampus Middle	brain
17	chr4:149203600-149204400	Enhancers	Ovary	ovary
18	chr4:149203600-149204600	Enhancers	Liver	Liver
19	chr4:149203600-149204800	Enhancers	Fetal Intestine Small	intestine
20	chr4:149203600-149205000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:149203600-149205400	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr4:149203600-149205600	Enhancers	Adipose Nuclei	Adipose
23	chr4:149203600-149206400	Enhancers	Fetal Lung	lung
24	chr4:149203600-149206400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr4:149203600-149207000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr4:149203800-149204000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr4:149203800-149204200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:149203800-149204200	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr4:149203800-149204200	Enhancers	Right Atrium	heart
30	chr4:149203800-149204400	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr4:149203800-149204600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr4:149203800-149204800	Enhancers	Small Intestine	intestine
33	chr4:149203800-149205200	Enhancers	Stomach Mucosa	stomach
34	chr4:149203800-149205800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr4:149203800-149206200	Enhancers	Colon Smooth Muscle	Colon

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