Variant report

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1429915	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3846318	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3846320	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3846323	0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs4260521	0.82[CHB][hapmap]
rs6535595	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6820304	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825530	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149176400-149188400	Weak transcription	Right Atrium	heart
3	chr4:149177200-149194800	Weak transcription	Small Intestine	intestine
4	chr4:149180000-149194600	Weak transcription	Left Ventricle	heart
5	chr4:149181200-149194800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:149182600-149194800	Weak transcription	Esophagus	oesophagus
7	chr4:149183000-149189800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:149183000-149194800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:149184600-149189600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:149184600-149194600	Weak transcription	Ovary	ovary
11	chr4:149186000-149194800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:149186200-149194800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:149186400-149188600	Enhancers	Fetal Intestine Large	intestine
14	chr4:149186400-149188600	Enhancers	Fetal Intestine Small	intestine
15	chr4:149187400-149194800	Weak transcription	Brain Angular Gyrus	brain
16	chr4:149187600-149188400	Enhancers	Fetal Heart	heart
17	chr4:149187600-149188600	Enhancers	Pancreas	Pancrea
18	chr4:149187800-149191600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:149187800-149194800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:149188000-149194800	Weak transcription	Lung	lung

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