Variant report

Variant	rs3846325
Chromosome Location	chr4:149209374-149209375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10021848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099690	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs12331321	0.90[CHB][hapmap]
rs17484454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858416	0.90[CHB][hapmap]
rs3846323	0.84[CEU][hapmap]
rs3911846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4260521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4594704	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62332045	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62332046	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6826213	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs6851669	0.90[CHB][hapmap]
rs7680420	1.00[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149192400-149209400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr4:149196800-149209600	Weak transcription	Pancreas	Pancrea
4	chr4:149199600-149209600	Weak transcription	Left Ventricle	heart
5	chr4:149204000-149209600	Weak transcription	Aorta	Aorta
6	chr4:149204200-149209400	Weak transcription	Colonic Mucosa	Colon
7	chr4:149204800-149209600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:149204800-149210800	Weak transcription	Fetal Intestine Small	intestine
9	chr4:149205200-149209600	Weak transcription	Stomach Mucosa	stomach
10	chr4:149205400-149209600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:149205400-149209600	Weak transcription	Gastric	stomach
12	chr4:149205600-149209800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:149205600-149211000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:149206000-149209800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:149206000-149211000	Weak transcription	Fetal Intestine Large	intestine
16	chr4:149206000-149211000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:149206400-149209600	Weak transcription	Psoas Muscle	Psoas
18	chr4:149206400-149210800	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:149206400-149216600	Weak transcription	Right Atrium	heart
20	chr4:149206400-149231600	Weak transcription	Right Ventricle	heart
21	chr4:149207000-149211600	Enhancers	Fetal Heart	heart
22	chr4:149207200-149213600	Weak transcription	Liver	Liver
23	chr4:149207600-149209600	Weak transcription	Brain Germinal Matrix	brain
24	chr4:149207800-149209600	Weak transcription	Colon Smooth Muscle	Colon
25	chr4:149207800-149209800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:149208600-149209600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:149208600-149209600	Weak transcription	Ovary	ovary
28	chr4:149208600-149209800	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:149208600-149211000	Weak transcription	Brain Anterior Caudate	brain
30	chr4:149208600-149211000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr4:149208600-149211000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr4:149208600-149214000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr4:149208800-149212000	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr4:149209000-149209800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:149209000-149210200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr4:149209200-149209800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr4:149209200-149210200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr4:149209200-149210200	Enhancers	Small Intestine	intestine

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