Variant report

Variant	rs6826213
Chromosome Location	chr4:149251850-149251851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10021848	1.00[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap]
rs11099690	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12331321	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17484454	1.00[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap]
rs1858416	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3846320	0.83[CHB][hapmap]
rs3846325	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs3911846	1.00[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4260521	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs4594704	0.86[ASN][1000 genomes]
rs61761530	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62332046	0.84[ASN][1000 genomes]
rs62332049	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62332051	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62333586	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333650	0.86[EUR][1000 genomes]
rs6851669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680420	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149235000-149266800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:149244400-149257600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:149245400-149257200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr4:149247400-149252000	Weak transcription	Aorta	Aorta
5	chr4:149248400-149252800	Enhancers	Fetal Heart	heart
6	chr4:149249400-149252800	Weak transcription	Lung	lung
7	chr4:149249400-149261400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:149249400-149263200	Weak transcription	Right Atrium	heart
9	chr4:149249400-149271200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:149249600-149252000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:149250000-149253800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:149251200-149252800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:149251200-149253000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:149251400-149252000	Enhancers	Right Ventricle	heart
15	chr4:149251400-149252200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:149251400-149252200	Enhancers	Left Ventricle	heart
17	chr4:149251400-149252200	Enhancers	Psoas Muscle	Psoas
18	chr4:149251400-149252800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:149251400-149253000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:149251800-149252200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:149251800-149253000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr4:149251800-149253600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr4:149251800-149265000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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