Variant report
Variant | rs62357063 |
---|---|
Chromosome Location | chr5:40946875-40946876 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10035225 | 0.97[EUR][1000 genomes] |
rs10035592 | 0.98[EUR][1000 genomes] |
rs10035621 | 0.87[EUR][1000 genomes] |
rs10041257 | 0.87[EUR][1000 genomes] |
rs10041319 | 0.86[EUR][1000 genomes] |
rs10051758 | 0.87[EUR][1000 genomes] |
rs10051888 | 0.87[EUR][1000 genomes] |
rs10054615 | 0.86[EUR][1000 genomes] |
rs10054948 | 0.90[EUR][1000 genomes] |
rs10056047 | 0.88[EUR][1000 genomes] |
rs10056708 | 0.87[EUR][1000 genomes] |
rs10058274 | 0.86[EUR][1000 genomes] |
rs10059679 | 0.86[EUR][1000 genomes] |
rs10060965 | 0.98[EUR][1000 genomes] |
rs10063892 | 0.87[EUR][1000 genomes] |
rs10066341 | 0.99[ASN][1000 genomes] |
rs10066847 | 0.85[EUR][1000 genomes] |
rs10072128 | 0.90[EUR][1000 genomes] |
rs10073246 | 0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs10076486 | 0.98[EUR][1000 genomes] |
rs10076663 | 0.82[EUR][1000 genomes] |
rs10077786 | 0.90[EUR][1000 genomes] |
rs10078706 | 0.87[EUR][1000 genomes] |
rs10079875 | 0.90[EUR][1000 genomes] |
rs10080165 | 0.88[EUR][1000 genomes] |
rs10472342 | 0.88[EUR][1000 genomes] |
rs10472344 | 0.90[EUR][1000 genomes] |
rs10473219 | 0.84[EUR][1000 genomes] |
rs10473220 | 0.89[EUR][1000 genomes] |
rs10473221 | 0.89[EUR][1000 genomes] |
rs10473227 | 0.97[EUR][1000 genomes] |
rs10473228 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs10512750 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs10941526 | 0.86[EUR][1000 genomes] |
rs10941527 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1120308 | 0.98[EUR][1000 genomes] |
rs11739731 | 0.80[AFR][1000 genomes];0.98[EUR][1000 genomes] |
rs11741315 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11746650 | 0.87[EUR][1000 genomes] |
rs11748194 | 0.90[EUR][1000 genomes] |
rs12109051 | 0.98[EUR][1000 genomes] |
rs12110278 | 0.85[EUR][1000 genomes] |
rs12657195 | 0.98[EUR][1000 genomes] |
rs12658133 | 0.80[AFR][1000 genomes];0.98[EUR][1000 genomes] |
rs12659571 | 0.94[EUR][1000 genomes] |
rs13353861 | 0.83[EUR][1000 genomes] |
rs13353865 | 0.85[EUR][1000 genomes] |
rs13354561 | 0.90[EUR][1000 genomes] |
rs13360188 | 0.90[EUR][1000 genomes] |
rs1393155 | 0.90[EUR][1000 genomes] |
rs1393156 | 0.84[EUR][1000 genomes] |
rs1615402 | 0.85[EUR][1000 genomes] |
rs1645519 | 0.87[EUR][1000 genomes] |
rs16870425 | 0.86[EUR][1000 genomes] |
rs16870491 | 0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1697939 | 0.82[EUR][1000 genomes] |
rs1697940 | 0.87[EUR][1000 genomes] |
rs1697941 | 0.87[EUR][1000 genomes] |
rs1697942 | 0.87[EUR][1000 genomes] |
rs17175825 | 0.99[ASN][1000 genomes] |
rs1827363 | 0.90[EUR][1000 genomes] |
rs1827366 | 0.90[EUR][1000 genomes] |
rs1827367 | 0.88[EUR][1000 genomes] |
rs188932 | 0.85[EUR][1000 genomes] |
rs2081153 | 0.86[EUR][1000 genomes] |
rs225749 | 0.86[EUR][1000 genomes] |
rs2329430 | 0.98[EUR][1000 genomes] |
rs2329431 | 0.93[ASN][1000 genomes] |
rs2455303 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2455307 | 0.98[EUR][1000 genomes] |
rs2455308 | 0.98[EUR][1000 genomes] |
rs2876848 | 0.97[EUR][1000 genomes] |
rs28770573 | 0.98[EUR][1000 genomes] |
rs28831497 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs28834109 | 0.97[EUR][1000 genomes] |
rs28860325 | 0.98[EUR][1000 genomes] |
rs28870511 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs323555 | 0.81[EUR][1000 genomes] |
rs323557 | 0.86[EUR][1000 genomes] |
rs323558 | 0.86[EUR][1000 genomes] |
rs323559 | 0.86[EUR][1000 genomes] |
rs323563 | 0.80[EUR][1000 genomes] |
rs323564 | 0.80[EUR][1000 genomes] |
rs323566 | 0.84[EUR][1000 genomes] |
rs34888872 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs369331 | 0.84[EUR][1000 genomes] |
rs373411 | 0.87[EUR][1000 genomes] |
rs3792640 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs3792641 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs3792642 | 0.88[EUR][1000 genomes] |
rs4277953 | 0.98[EUR][1000 genomes] |
rs4277954 | 0.98[EUR][1000 genomes] |
rs439322 | 0.86[EUR][1000 genomes] |
rs4461680 | 0.98[EUR][1000 genomes] |
rs446920 | 0.85[EUR][1000 genomes] |
rs4559041 | 0.98[EUR][1000 genomes] |
rs567165 | 0.87[EUR][1000 genomes] |
rs619491 | 0.87[EUR][1000 genomes] |
rs62357601 | 0.84[EUR][1000 genomes] |
rs62357603 | 0.80[EUR][1000 genomes] |
rs62357605 | 0.80[EUR][1000 genomes] |
rs62357612 | 0.84[EUR][1000 genomes] |
rs62357636 | 0.87[EUR][1000 genomes] |
rs62357641 | 0.90[EUR][1000 genomes] |
rs62358575 | 0.95[EUR][1000 genomes] |
rs62358580 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72749508 | 0.86[EUR][1000 genomes] |
rs72749514 | 0.90[EUR][1000 genomes] |
rs72749521 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7445411 | 0.88[EUR][1000 genomes] |
rs7701643 | 0.97[EUR][1000 genomes] |
rs7701662 | 0.98[EUR][1000 genomes] |
rs7701871 | 0.98[EUR][1000 genomes] |
rs7704691 | 0.98[EUR][1000 genomes] |
rs7706776 | 0.98[EUR][1000 genomes] |
rs7711745 | 0.82[EUR][1000 genomes] |
rs7716062 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7717388 | 0.87[EUR][1000 genomes] |
rs7717391 | 0.87[EUR][1000 genomes] |
rs7717457 | 0.88[EUR][1000 genomes] |
rs7717794 | 0.98[EUR][1000 genomes] |
rs7721703 | 0.98[EUR][1000 genomes] |
rs7724262 | 0.98[EUR][1000 genomes] |
rs7731772 | 0.87[EUR][1000 genomes] |
rs7731944 | 0.87[EUR][1000 genomes] |
rs7733440 | 0.90[EUR][1000 genomes] |
rs9292790 | 0.81[EUR][1000 genomes] |
rs9292793 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs9292795 | 0.98[EUR][1000 genomes] |
rs9292798 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs972007 | 0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs972008 | 0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs9885543 | 0.98[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv881467 | chr5:40869802-41008650 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv2757114 | chr5:40874078-41009282 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | esv2759341 | chr5:40874078-41009282 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv823055 | chr5:40875708-41004839 | Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | esv35077 | chr5:40875843-41000671 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
6 | nsv830268 | chr5:40897361-41138366 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
7 | nsv880796 | chr5:40934832-40985604 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | nsv823056 | chr5:40940585-40955442 | Weak transcription Strong transcription Enhancers Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:40931200-40992200 | Weak transcription | Stomach Smooth Muscle | stomach |
2 | chr5:40931800-40991000 | Weak transcription | Duodenum Mucosa | Duodenum |
3 | chr5:40933400-40956400 | Weak transcription | Fetal Brain Male | brain |
4 | chr5:40937000-40959600 | Weak transcription | Left Ventricle | heart |
5 | chr5:40942400-40947600 | Weak transcription | Ovary | ovary |
6 | chr5:40943400-40949600 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
7 | chr5:40945200-40958200 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
8 | chr5:40945800-40947200 | Weak transcription | Fetal Lung | lung |