Variant report

Variant	rs9292798
Chromosome Location	chr5:40954627-40954628
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:40953904..40955665-chr5:40958137..40961291,3	K562	blood:

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10035225	0.97[EUR][1000 genomes]
rs10035592	0.98[EUR][1000 genomes]
rs10035621	0.87[EUR][1000 genomes]
rs10041257	0.87[EUR][1000 genomes]
rs10041319	0.86[EUR][1000 genomes]
rs10051758	0.87[EUR][1000 genomes]
rs10051888	0.87[EUR][1000 genomes]
rs10054615	0.86[EUR][1000 genomes]
rs10054948	0.90[EUR][1000 genomes]
rs10056047	0.88[EUR][1000 genomes]
rs10056708	0.87[EUR][1000 genomes]
rs10058274	0.86[EUR][1000 genomes]
rs10059679	0.86[EUR][1000 genomes]
rs10060965	0.98[EUR][1000 genomes]
rs10063892	0.87[EUR][1000 genomes]
rs10066341	0.93[ASN][1000 genomes]
rs10066847	0.85[EUR][1000 genomes]
rs10072128	0.90[EUR][1000 genomes]
rs10073246	0.95[EUR][1000 genomes]
rs10076486	0.98[EUR][1000 genomes]
rs10076663	0.82[EUR][1000 genomes]
rs10077786	0.90[EUR][1000 genomes]
rs10078706	0.87[EUR][1000 genomes]
rs10079875	0.90[EUR][1000 genomes]
rs10080165	0.88[EUR][1000 genomes]
rs10472342	0.88[EUR][1000 genomes]
rs10472344	0.90[EUR][1000 genomes]
rs10473219	0.84[EUR][1000 genomes]
rs10473220	0.89[EUR][1000 genomes]
rs10473221	0.89[EUR][1000 genomes]
rs10473227	0.97[EUR][1000 genomes]
rs10473228	0.98[EUR][1000 genomes]
rs10512750	0.98[EUR][1000 genomes]
rs10941526	0.86[EUR][1000 genomes]
rs10941527	0.98[EUR][1000 genomes]
rs1120308	0.98[EUR][1000 genomes]
rs11739731	0.98[EUR][1000 genomes]
rs11741315	0.98[EUR][1000 genomes]
rs11746650	0.87[EUR][1000 genomes]
rs11748194	0.90[EUR][1000 genomes]
rs12109051	0.98[EUR][1000 genomes]
rs12110278	0.85[EUR][1000 genomes]
rs12657195	0.98[EUR][1000 genomes]
rs12658133	0.98[EUR][1000 genomes]
rs12659571	0.94[EUR][1000 genomes]
rs13353861	0.83[EUR][1000 genomes]
rs13353865	0.85[EUR][1000 genomes]
rs13354561	0.90[EUR][1000 genomes]
rs13360188	0.90[EUR][1000 genomes]
rs1393155	0.90[EUR][1000 genomes]
rs1393156	0.84[EUR][1000 genomes]
rs1615402	0.85[EUR][1000 genomes]
rs1645519	0.87[EUR][1000 genomes]
rs16870425	0.86[EUR][1000 genomes]
rs16870491	0.95[EUR][1000 genomes]
rs1697939	0.82[EUR][1000 genomes]
rs1697940	0.87[EUR][1000 genomes]
rs1697941	0.87[EUR][1000 genomes]
rs1697942	0.87[EUR][1000 genomes]
rs17175825	0.93[ASN][1000 genomes]
rs1827363	0.90[EUR][1000 genomes]
rs1827366	0.90[EUR][1000 genomes]
rs1827367	0.88[EUR][1000 genomes]
rs188932	0.85[EUR][1000 genomes]
rs2081153	0.86[EUR][1000 genomes]
rs225749	0.86[EUR][1000 genomes]
rs2329430	0.98[EUR][1000 genomes]
rs2329431	0.99[ASN][1000 genomes]
rs2455303	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2455307	0.98[EUR][1000 genomes]
rs2455308	0.98[EUR][1000 genomes]
rs2876848	0.97[EUR][1000 genomes]
rs28770573	0.98[EUR][1000 genomes]
rs28831497	0.98[EUR][1000 genomes]
rs28834109	0.97[EUR][1000 genomes]
rs28860325	0.98[EUR][1000 genomes]
rs28870511	0.98[EUR][1000 genomes]
rs323555	0.81[EUR][1000 genomes]
rs323557	0.86[EUR][1000 genomes]
rs323558	0.86[EUR][1000 genomes]
rs323559	0.86[EUR][1000 genomes]
rs323563	0.80[EUR][1000 genomes]
rs323564	0.80[EUR][1000 genomes]
rs323566	0.84[EUR][1000 genomes]
rs34888872	0.98[EUR][1000 genomes]
rs369331	0.84[EUR][1000 genomes]
rs373411	0.87[EUR][1000 genomes]
rs3792640	0.98[EUR][1000 genomes]
rs3792641	0.98[EUR][1000 genomes]
rs3792642	0.88[EUR][1000 genomes]
rs4277953	0.98[EUR][1000 genomes]
rs4277954	0.98[EUR][1000 genomes]
rs439322	0.86[EUR][1000 genomes]
rs4461680	0.98[EUR][1000 genomes]
rs446920	0.85[EUR][1000 genomes]
rs4559041	0.98[EUR][1000 genomes]
rs567165	0.87[EUR][1000 genomes]
rs619491	0.87[EUR][1000 genomes]
rs62357063	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62357601	0.84[EUR][1000 genomes]
rs62357603	0.80[EUR][1000 genomes]
rs62357605	0.80[EUR][1000 genomes]
rs62357612	0.84[EUR][1000 genomes]
rs62357636	0.87[EUR][1000 genomes]
rs62357641	0.90[EUR][1000 genomes]
rs62358575	0.95[EUR][1000 genomes]
rs62358580	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72749508	0.86[EUR][1000 genomes]
rs72749514	0.90[EUR][1000 genomes]
rs72749521	0.95[EUR][1000 genomes]
rs7445411	0.88[EUR][1000 genomes]
rs7701643	0.97[EUR][1000 genomes]
rs7701662	0.98[EUR][1000 genomes]
rs7701871	0.98[EUR][1000 genomes]
rs7704691	0.98[EUR][1000 genomes]
rs7706776	0.98[EUR][1000 genomes]
rs7711745	0.82[EUR][1000 genomes]
rs7716062	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7717388	0.87[EUR][1000 genomes]
rs7717391	0.87[EUR][1000 genomes]
rs7717457	0.88[EUR][1000 genomes]
rs7717794	0.98[EUR][1000 genomes]
rs7721703	0.98[EUR][1000 genomes]
rs7724262	0.98[EUR][1000 genomes]
rs7731772	0.87[EUR][1000 genomes]
rs7731944	0.87[EUR][1000 genomes]
rs7733440	0.90[EUR][1000 genomes]
rs9292790	0.81[EUR][1000 genomes]
rs9292793	0.97[EUR][1000 genomes]
rs9292795	0.98[EUR][1000 genomes]
rs972007	0.95[EUR][1000 genomes]
rs972008	0.95[EUR][1000 genomes]
rs9885543	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881467	chr5:40869802-41008650	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757114	chr5:40874078-41009282	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759341	chr5:40874078-41009282	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv823055	chr5:40875708-41004839	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv35077	chr5:40875843-41000671	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv880796	chr5:40934832-40985604	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv823056	chr5:40940585-40955442	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40931200-40992200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr5:40931800-40991000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:40933400-40956400	Weak transcription	Fetal Brain Male	brain
4	chr5:40937000-40959600	Weak transcription	Left Ventricle	heart
5	chr5:40945200-40958200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:40951200-40959600	Weak transcription	Pancreas	Pancrea
7	chr5:40953400-40954800	Weak transcription	Ovary	ovary
8	chr5:40953400-40955200	Weak transcription	Fetal Lung	lung
9	chr5:40953600-40956800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links