Variant report

Variant	rs62357862
Chromosome Location	chr5:107005910-107005911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FER-13	chr5:107004862-107006391	NONHSAT103114

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1423214	0.90[EUR][1000 genomes]
rs17165754	1.00[ASN][1000 genomes]
rs56851818	1.00[ASN][1000 genomes]
rs57218926	1.00[ASN][1000 genomes]
rs62357930	1.00[ASN][1000 genomes]
rs62357933	1.00[ASN][1000 genomes]
rs62357936	1.00[ASN][1000 genomes]
rs67626930	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107000000-107006800	Active TSS	GM12878-XiMat	blood
2	chr5:107002400-107009600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:107002400-107009800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr5:107003000-107009600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:107003000-107009600	Active TSS	A549	lung
6	chr5:107003200-107006400	Bivalent/Poised TSS	Fetal Brain Female	brain
7	chr5:107003200-107009600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:107003800-107006000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:107003800-107006200	Active TSS	Right Ventricle	heart
10	chr5:107003800-107009600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:107003800-107009600	Active TSS	NHDF-Ad	bronchial
12	chr5:107004000-107008600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:107004000-107008600	Active TSS	HSMM	muscle
14	chr5:107004000-107009000	Active TSS	Left Ventricle	heart
15	chr5:107004000-107009400	Active TSS	Placenta Amnion	Placenta Amnion
16	chr5:107004000-107009600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:107004000-107009600	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr5:107004000-107009600	Active TSS	Aorta	Aorta
19	chr5:107004000-107009600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
20	chr5:107004000-107009600	Active TSS	Right Atrium	heart
21	chr5:107004200-107006600	Bivalent/Poised TSS	Osteobl	bone
22	chr5:107004200-107009400	Active TSS	NHLF	lung
23	chr5:107004200-107009600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:107004200-107009600	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr5:107004200-107009600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:107004400-107006000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr5:107004400-107006000	Active TSS	Colon Smooth Muscle	Colon
28	chr5:107004400-107006200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
29	chr5:107004400-107007600	Active TSS	NH-A	brain
30	chr5:107004400-107009600	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr5:107004400-107009600	Active TSS	Brain Anterior Caudate	brain
32	chr5:107004400-107009600	Active TSS	Rectal Smooth Muscle	rectum
33	chr5:107004600-107006000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
34	chr5:107004600-107007000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
35	chr5:107004600-107007000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
36	chr5:107004600-107007600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
37	chr5:107004600-107007800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
38	chr5:107004600-107008600	Active TSS	HMEC	breast
39	chr5:107004600-107008600	Active TSS	NHEK	skin
40	chr5:107004600-107009000	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr5:107004600-107009400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr5:107004600-107009400	Active TSS	Gastric	stomach
43	chr5:107004600-107009600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr5:107004600-107009600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr5:107004600-107009600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:107004600-107009600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr5:107004600-107009600	Active TSS	Fetal Kidney	kidney
48	chr5:107004600-107009600	Active TSS	Fetal Lung	lung
49	chr5:107004600-107009600	Active TSS	Stomach Mucosa	stomach
50	chr5:107004800-107006000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle

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