Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1471041	1.00[JPT][hapmap]
rs149155	1.00[JPT][hapmap]
rs163614	1.00[JPT][hapmap]
rs163889	1.00[JPT][hapmap]
rs163890	1.00[JPT][hapmap]
rs164851	1.00[JPT][hapmap]
rs17160352	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17160355	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs39918	1.00[JPT][hapmap]
rs56851818	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57218926	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357862	1.00[ASN][1000 genomes]
rs62357893	0.87[EUR][1000 genomes]
rs62357895	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62357897	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62357930	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357933	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357936	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67626930	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs849520	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3362504	chr5:107044478-107047026	Weak transcription ZNF genes & repeats	lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3441686	chr5:107044728-107046951	Weak transcription ZNF genes & repeats	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107041600-107049000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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