Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107016859..107019087-chr5:107031828..107034099,2	MCF-7	breast:
2	chr5:107007871..107009484-chr5:107016086..107018030,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1471041	1.00[JPT][hapmap]
rs149155	1.00[JPT][hapmap]
rs163614	1.00[JPT][hapmap]
rs163889	1.00[JPT][hapmap]
rs163890	1.00[JPT][hapmap]
rs164851	1.00[JPT][hapmap]
rs17160355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17165754	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs39918	1.00[JPT][hapmap]
rs56851818	0.84[EUR][1000 genomes]
rs57218926	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62357893	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357895	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357897	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357930	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62357933	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62357936	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67626930	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6887589	0.81[TSI][hapmap]
rs849520	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107009400-107023200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:107009600-107018200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:107009800-107017800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:107010000-107018200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:107016600-107017800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:107017000-107018600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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