Variant report

Variant	rs62357930
Chromosome Location	chr5:107041043-107041044
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17160352	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17160355	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17165754	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56851818	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57218926	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357862	1.00[ASN][1000 genomes]
rs62357893	0.89[EUR][1000 genomes]
rs62357895	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62357897	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62357933	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357936	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67626930	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107038000-107041400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107040400-107041200	Active TSS	Right Atrium	heart
4	chr5:107040400-107041200	Active TSS	NHLF	lung
5	chr5:107040400-107041600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:107040400-107041600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:107040400-107041800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:107040600-107041400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:107040600-107041400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr5:107040600-107041400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:107040600-107041400	Active TSS	Brain Anterior Caudate	brain
12	chr5:107040600-107041400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:107040600-107041400	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr5:107040600-107041400	Enhancers	HMEC	breast
15	chr5:107040600-107041400	Flanking Active TSS	HUVEC	blood vessel
16	chr5:107040600-107041400	Flanking Active TSS	NHDF-Ad	bronchial
17	chr5:107040600-107041400	Flanking Active TSS	Osteobl	bone
18	chr5:107040600-107041600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr5:107040600-107041600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:107040600-107041600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr5:107040600-107041600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:107040600-107041800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr5:107040600-107041800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:107040600-107041800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr5:107040800-107041200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:107040800-107041200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr5:107040800-107041200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:107040800-107041200	Active TSS	Brain Cingulate Gyrus	brain
29	chr5:107040800-107041200	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr5:107040800-107041200	Enhancers	Brain Hippocampus Middle	brain
31	chr5:107040800-107041200	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr5:107040800-107041400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:107040800-107041400	Active TSS	Brain Substantia Nigra	brain
34	chr5:107040800-107041400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr5:107040800-107041400	Flanking Active TSS	NH-A	brain
36	chr5:107040800-107041600	Enhancers	HSMM	muscle
37	chr5:107040800-107041800	Enhancers	NHEK	skin
38	chr5:107041000-107041200	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr5:107041000-107041200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr5:107041000-107041200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr5:107041000-107041200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:107041000-107041400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr5:107041000-107041400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr5:107041000-107041400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr5:107041000-107041400	Active TSS	Adipose Nuclei	Adipose

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