Variant report

Variant	rs62358380
Chromosome Location	chr5:57038252-57038253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57037965..57040038-chr5:57755132..57756983,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10447121	0.82[EUR][1000 genomes]
rs10940574	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12514617	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12514618	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12515493	0.82[EUR][1000 genomes]
rs12517867	0.82[EUR][1000 genomes]
rs12520466	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12522697	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12523004	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1544621	0.82[EUR][1000 genomes]
rs17689645	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17689832	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2160057	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2160058	0.82[EUR][1000 genomes]
rs2192367	0.85[EUR][1000 genomes]
rs2192368	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2898027	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58610852	0.81[EUR][1000 genomes]
rs58632739	0.82[EUR][1000 genomes]
rs62358372	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62358374	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62358381	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62361169	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6450432	0.82[EUR][1000 genomes]
rs6450433	0.82[EUR][1000 genomes]
rs6450434	0.82[EUR][1000 genomes]
rs6450435	0.82[EUR][1000 genomes]
rs6870485	0.85[EUR][1000 genomes]
rs6891648	0.82[EUR][1000 genomes]
rs6894116	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72767430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72767434	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767441	0.83[EUR][1000 genomes]
rs72767444	0.82[EUR][1000 genomes]
rs741181	0.83[EUR][1000 genomes]
rs7718447	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57032400-57040600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:57033000-57041400	Weak transcription	NH-A	brain
3	chr5:57033000-57044800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:57033400-57041600	Weak transcription	NHDF-Ad	bronchial
5	chr5:57034200-57042200	Weak transcription	Fetal Kidney	kidney
6	chr5:57036400-57040200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:57037400-57038600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:57037400-57041600	Weak transcription	Osteobl	bone
9	chr5:57037800-57040200	Enhancers	Fetal Intestine Large	intestine
10	chr5:57037800-57041000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:57037800-57041000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:57037800-57041400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:57037800-57045000	Weak transcription	HMEC	breast
14	chr5:57038200-57038600	Enhancers	Hela-S3	cervix
15	chr5:57038200-57040400	Enhancers	Fetal Intestine Small	intestine

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