Variant report

Variant	rs58610852
Chromosome Location	chr5:57052343-57052344
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10447121	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10940574	0.80[EUR][1000 genomes]
rs10940578	0.86[EUR][1000 genomes]
rs12186536	0.86[EUR][1000 genomes]
rs12514617	0.80[EUR][1000 genomes]
rs12514618	0.80[EUR][1000 genomes]
rs12515493	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12515736	0.81[EUR][1000 genomes]
rs12517238	0.89[EUR][1000 genomes]
rs12517867	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12522697	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1432482	0.85[EUR][1000 genomes]
rs1544621	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17689832	0.81[EUR][1000 genomes]
rs17690351	0.89[EUR][1000 genomes]
rs17690411	0.89[EUR][1000 genomes]
rs17746879	0.89[EUR][1000 genomes]
rs17746968	0.89[EUR][1000 genomes]
rs2160057	0.81[EUR][1000 genomes]
rs2160058	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2192367	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2192368	0.81[EUR][1000 genomes]
rs56830694	0.86[EUR][1000 genomes]
rs57200729	0.89[EUR][1000 genomes]
rs58632739	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62358372	0.80[EUR][1000 genomes]
rs62358374	0.80[EUR][1000 genomes]
rs62358380	0.81[EUR][1000 genomes]
rs62358381	0.82[EUR][1000 genomes]
rs6450432	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450433	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450434	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450435	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450437	0.92[EUR][1000 genomes]
rs6870485	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6878042	0.89[EUR][1000 genomes]
rs6891648	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6894375	0.89[EUR][1000 genomes]
rs72751313	0.89[EUR][1000 genomes]
rs72751317	0.89[EUR][1000 genomes]
rs72751318	0.89[EUR][1000 genomes]
rs72751323	0.87[EUR][1000 genomes]
rs72767434	0.81[EUR][1000 genomes]
rs72767441	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72767444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs741181	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7718447	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57045400-57054800	Weak transcription	Pancreas	Pancrea
2	chr5:57050600-57054600	Weak transcription	HMEC	breast
3	chr5:57050800-57054200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:57051000-57054600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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