Variant report

Variant	rs1432482
Chromosome Location	chr5:57103965-57103966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57093138..57095197-chr5:57103186..57104932,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10447121	0.86[EUR][1000 genomes]
rs10940578	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12186536	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12515493	0.86[EUR][1000 genomes]
rs12515736	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12517238	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12517867	0.86[EUR][1000 genomes]
rs12522697	0.83[EUR][1000 genomes]
rs1544621	0.86[EUR][1000 genomes]
rs16887444	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs17690351	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17690411	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17746879	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17746968	0.92[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17747913	1.00[CHD][hapmap]
rs2160058	0.86[EUR][1000 genomes]
rs2192367	0.83[EUR][1000 genomes]
rs56830694	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57200729	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58610852	0.85[EUR][1000 genomes]
rs58632739	0.86[EUR][1000 genomes]
rs6450432	0.86[EUR][1000 genomes]
rs6450433	0.86[EUR][1000 genomes]
rs6450434	0.86[EUR][1000 genomes]
rs6450435	0.86[EUR][1000 genomes]
rs6450437	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6870485	0.83[EUR][1000 genomes]
rs6872726	1.00[CHD][hapmap]
rs6878042	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6891648	0.86[EUR][1000 genomes]
rs6894375	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72751313	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72751317	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72751318	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72751323	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72767441	0.85[EUR][1000 genomes]
rs72767444	0.86[EUR][1000 genomes]
rs741181	0.85[EUR][1000 genomes]
rs7718447	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57100600-57105000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:57100600-57111600	Weak transcription	HSMM	muscle
3	chr5:57101200-57105000	Weak transcription	NHLF	lung
4	chr5:57101600-57111600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:57102200-57105200	Weak transcription	NH-A	brain
6	chr5:57102400-57107600	Weak transcription	Osteobl	bone
7	chr5:57102400-57108000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr5:57102400-57108000	Weak transcription	NHDF-Ad	bronchial
9	chr5:57102400-57112000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links