Variant report

Variant	rs72767441
Chromosome Location	chr5:57045323-57045324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10447121	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10940574	0.82[EUR][1000 genomes]
rs10940578	0.86[EUR][1000 genomes]
rs12186536	0.86[EUR][1000 genomes]
rs12514617	0.82[EUR][1000 genomes]
rs12514618	0.82[EUR][1000 genomes]
rs12515493	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12515736	0.81[EUR][1000 genomes]
rs12517238	0.89[EUR][1000 genomes]
rs12517867	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12520466	0.81[EUR][1000 genomes]
rs12522697	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12523004	0.80[EUR][1000 genomes]
rs1432482	0.85[EUR][1000 genomes]
rs1544621	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17689645	0.81[EUR][1000 genomes]
rs17689832	0.83[EUR][1000 genomes]
rs17690351	0.89[EUR][1000 genomes]
rs17690411	0.89[EUR][1000 genomes]
rs17746879	0.89[EUR][1000 genomes]
rs17746968	0.89[EUR][1000 genomes]
rs2160057	0.83[EUR][1000 genomes]
rs2160058	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2192367	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2192368	0.83[EUR][1000 genomes]
rs2898027	0.80[EUR][1000 genomes]
rs56830694	0.86[EUR][1000 genomes]
rs57200729	0.89[EUR][1000 genomes]
rs58610852	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58632739	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62358372	0.82[EUR][1000 genomes]
rs62358374	0.82[EUR][1000 genomes]
rs62358380	0.83[EUR][1000 genomes]
rs62358381	0.85[EUR][1000 genomes]
rs62361169	0.80[EUR][1000 genomes]
rs6450432	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450433	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450434	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450435	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450437	0.92[EUR][1000 genomes]
rs6870485	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6878042	0.89[EUR][1000 genomes]
rs6891648	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6894116	0.80[EUR][1000 genomes]
rs6894375	0.89[EUR][1000 genomes]
rs72751313	0.89[EUR][1000 genomes]
rs72751317	0.89[EUR][1000 genomes]
rs72751318	0.89[EUR][1000 genomes]
rs72751323	0.87[EUR][1000 genomes]
rs72767430	0.81[EUR][1000 genomes]
rs72767434	0.83[EUR][1000 genomes]
rs72767444	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs741181	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7718447	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57042600-57048600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:57042600-57050200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:57043000-57045600	Weak transcription	HSMM	muscle
4	chr5:57044800-57045800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:57044800-57046000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:57044800-57046000	Enhancers	NHDF-Ad	bronchial
7	chr5:57044800-57046000	Enhancers	Osteobl	bone
8	chr5:57044800-57046200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:57045000-57045800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:57045000-57046000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:57045000-57046000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:57045000-57046000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:57045000-57046000	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links