Variant report

Variant	rs6872726
Chromosome Location	chr5:57199577-57199578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10038250	0.81[EUR][1000 genomes]
rs10066649	0.81[EUR][1000 genomes]
rs10471442	0.81[EUR][1000 genomes]
rs17746968	1.00[CHD][hapmap]
rs17747913	1.00[CHD][hapmap]
rs61571910	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57187800-57202600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:57192600-57203800	Weak transcription	HSMMtube	muscle
3	chr5:57196400-57200600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:57197400-57200200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr5:57197800-57199800	Enhancers	Fetal Lung	lung
6	chr5:57198800-57199600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:57199000-57207200	Weak transcription	Psoas Muscle	Psoas
8	chr5:57199200-57199600	Weak transcription	Fetal Stomach	stomach
9	chr5:57199200-57200000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:57199200-57200200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:57199200-57200200	Enhancers	Brain Anterior Caudate	brain
12	chr5:57199400-57200200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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