Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57180077..57190681-chr5:57752076..57758335,34	MCF-7	breast:
2	chr5:57182086..57190430-chr5:57747262..57757932,34	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10038250	0.81[EUR][1000 genomes]
rs10066649	0.81[EUR][1000 genomes]
rs10471442	0.81[EUR][1000 genomes]
rs61571910	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6872726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57185800-57195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57186000-57191400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:57186200-57191200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:57186200-57191400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:57186200-57191400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:57186200-57191400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:57186200-57191400	Weak transcription	HSMMtube	muscle
8	chr5:57186200-57191400	Weak transcription	Osteobl	bone
9	chr5:57186600-57190200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:57187600-57191600	Weak transcription	NHEK	skin
11	chr5:57187800-57191200	Weak transcription	A549	lung
12	chr5:57187800-57191400	Weak transcription	Right Atrium	heart
13	chr5:57187800-57191400	Weak transcription	Spleen	Spleen
14	chr5:57187800-57191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:57187800-57202600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:57188000-57190600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:57189400-57191800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:57189800-57191200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:57189800-57191400	Weak transcription	Aorta	Aorta
20	chr5:57190000-57191200	Weak transcription	Fetal Lung	lung

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