Variant report

Variant	rs10471442
Chromosome Location	chr5:57203732-57203733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10038250	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057703	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066649	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61571910	0.81[EUR][1000 genomes]
rs6872726	0.81[EUR][1000 genomes]
rs73093746	0.81[EUR][1000 genomes]
rs73093754	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57192600-57203800	Weak transcription	HSMMtube	muscle
2	chr5:57199000-57207200	Weak transcription	Psoas Muscle	Psoas
3	chr5:57202800-57207000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:57202800-57207200	Weak transcription	Fetal Lung	lung
5	chr5:57203400-57207000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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