Variant report

Variant	rs73093746
Chromosome Location	chr5:57187718-57187719
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57180077..57190681-chr5:57752076..57758335,34	MCF-7	breast:
2	chr5:57185806..57187932-chr5:57190286..57191862,2	MCF-7	breast:
3	chr5:57183403..57189174-chr5:57746752..57751210,7	MCF-7	breast:
4	chr5:57187233..57188086-chr5:57390815..57391731,2	MCF-7	breast:
5	chr5:57183661..57185770-chr5:57186157..57189022,2	MCF-7	breast:
6	chr5:57185206..57187944-chr5:57191960..57193900,2	MCF-7	breast:
7	chr5:57182086..57190430-chr5:57747262..57757932,34	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10038250	0.81[EUR][1000 genomes]
rs10066649	0.81[EUR][1000 genomes]
rs10471442	0.81[EUR][1000 genomes]
rs61571910	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6872726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57183400-57187800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr5:57183400-57187800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr5:57183600-57188800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:57184200-57188000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:57184400-57189200	Weak transcription	Fetal Lung	lung
6	chr5:57184600-57189200	Weak transcription	Fetal Brain Male	brain
7	chr5:57185800-57195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:57186000-57189400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:57186000-57191400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:57186200-57187800	Enhancers	A549	lung
11	chr5:57186200-57191200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:57186200-57191400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:57186200-57191400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:57186200-57191400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:57186200-57191400	Weak transcription	HSMMtube	muscle
16	chr5:57186200-57191400	Weak transcription	Osteobl	bone
17	chr5:57186400-57187800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr5:57186600-57190200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:57186800-57187800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr5:57187000-57187800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr5:57187000-57187800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:57187200-57187800	Enhancers	HMEC	breast
23	chr5:57187200-57188000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr5:57187400-57187800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr5:57187400-57187800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr5:57187400-57187800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr5:57187400-57187800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:57187400-57187800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr5:57187400-57187800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:57187400-57187800	Enhancers	Left Ventricle	heart
31	chr5:57187400-57187800	Enhancers	Lung	lung
32	chr5:57187400-57187800	Enhancers	Right Atrium	heart
33	chr5:57187400-57187800	Enhancers	Spleen	Spleen
34	chr5:57187400-57187800	Enhancers	HUVEC	blood vessel
35	chr5:57187400-57188200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr5:57187600-57187800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:57187600-57187800	Enhancers	Pancreas	Pancrea
38	chr5:57187600-57191600	Weak transcription	NHEK	skin

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