Variant report

Variant	rs62361882
Chromosome Location	chr5:103425376-103425377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:103419555..103422324-chr5:103423618..103426898,4	K562	blood:
2	chr5:103424379..103427080-chr5:103428532..103430854,2	K562	blood:
3	chr5:103424304..103427061-chr5:103434256..103435929,2	K562	blood:
4	chr5:103424892..103429270-chr5:103431386..103433912,4	K562	blood:
5	chr5:103424892..103427295-chr5:103431386..103434334,3	K562	blood:

Variant related genes	Relation type
ENSG00000201910	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12188706	0.93[EUR][1000 genomes]
rs1289227	0.84[EUR][1000 genomes]
rs1296166	0.98[EUR][1000 genomes]
rs1362694	0.82[EUR][1000 genomes]
rs1819900	0.93[EUR][1000 genomes]
rs62361879	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62361880	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62361881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62363594	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62363595	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62363596	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62363597	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62363599	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62363600	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6886521	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6889379	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6890378	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72773282	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72773285	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72773286	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72773290	0.91[EUR][1000 genomes]
rs72775009	0.85[EUR][1000 genomes]
rs7725285	0.90[EUR][1000 genomes]
rs954156	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025859	chr5:102744479-103710290	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537833	chr5:102744479-103710290	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv882524	chr5:103237745-104019292	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1027818	chr5:103318123-103445127	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1019939	chr5:103380722-103770101	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv537836	chr5:103380722-103770101	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1033278	chr5:103383207-103773361	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv882526	chr5:103390664-103478518	Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv462330	chr5:103406680-103533884	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv599201	chr5:103406680-103533884	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv462331	chr5:103408356-103472789	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv599202	chr5:103408356-103472789	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:103425000-103425400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:103425000-103425800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:103425200-103425400	Active TSS	K562	blood
4	chr5:103425200-103425600	Enhancers	H9 Cell Line	embryonic stem cell

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