Variant report

Variant	rs62369189
Chromosome Location	chr5:74339020-74339021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74338841..74341157-chr5:74343981..74347541,4	MCF-7	breast:
2	chr5:74330454..74335475-chr5:74336350..74340630,5	MCF-7	breast:
3	chr5:74332922..74335648-chr5:74338677..74341293,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11955513	0.82[ASN][1000 genomes]
rs4597948	0.87[ASN][1000 genomes]
rs62369187	0.85[ASN][1000 genomes]
rs62369188	0.84[ASN][1000 genomes]
rs7734055	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1835096	chr5:74336883-74356857	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74313600-74341800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:74317600-74344200	Weak transcription	Ovary	ovary
3	chr5:74328000-74339400	Weak transcription	Fetal Stomach	stomach
4	chr5:74328600-74345600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:74329200-74346800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:74329800-74344400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:74330000-74339800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:74330000-74344400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:74330400-74339400	Weak transcription	Gastric	stomach
10	chr5:74330400-74340400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:74330400-74341800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:74330400-74344200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr5:74330600-74339400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr5:74330600-74339400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:74330600-74339600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:74330600-74339600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:74330600-74341800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:74330600-74342600	Weak transcription	Colon Smooth Muscle	Colon
19	chr5:74330600-74345400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:74330600-74348000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr5:74331400-74345400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:74331400-74345600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr5:74331600-74339800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:74331600-74344000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr5:74331600-74347000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr5:74332600-74340400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:74332600-74343200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr5:74332800-74339600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr5:74333200-74339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr5:74333200-74339800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr5:74333200-74344000	Weak transcription	Osteobl	bone
32	chr5:74333200-74346000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr5:74333400-74339200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr5:74333400-74343800	Weak transcription	NH-A	brain
35	chr5:74333400-74344000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:74333400-74344000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr5:74333600-74339600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr5:74334200-74340200	Strong transcription	Primary T cells from cord blood	blood
39	chr5:74334200-74344000	Weak transcription	Stomach Mucosa	stomach
40	chr5:74334600-74339800	Weak transcription	Aorta	Aorta
41	chr5:74334800-74339800	Weak transcription	Pancreas	Pancrea
42	chr5:74335000-74340400	Strong transcription	Fetal Thymus	thymus
43	chr5:74335200-74339800	Weak transcription	Fetal Intestine Small	intestine
44	chr5:74335400-74340200	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr5:74335600-74341400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr5:74335800-74340400	Strong transcription	Thymus	Thymus
47	chr5:74336400-74340000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr5:74336600-74345600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr5:74337000-74342200	Strong transcription	Fetal Intestine Large	intestine
50	chr5:74337000-74343800	Strong transcription	Duodenum Mucosa	Duodenum

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