Variant report

Variant	rs7734055
Chromosome Location	chr5:74335071-74335072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74330454..74335475-chr5:74336350..74340630,5	MCF-7	breast:
2	chr5:74334981..74336782-chr5:74342190..74344248,2	MCF-7	breast:
3	chr5:74332922..74335648-chr5:74338677..74341293,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10462510	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11955513	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12515891	0.92[ASN][1000 genomes]
rs4492095	0.85[ASN][1000 genomes]
rs4704166	0.87[ASN][1000 genomes]
rs58323964	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61342638	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61616736	0.81[ASN][1000 genomes]
rs62369187	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62369188	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62369189	0.85[ASN][1000 genomes]
rs7706858	0.85[ASN][1000 genomes]
rs7736471	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74313600-74341800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:74317600-74344200	Weak transcription	Ovary	ovary
3	chr5:74328000-74339400	Weak transcription	Fetal Stomach	stomach
4	chr5:74328600-74345600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:74329200-74346800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:74329600-74338000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:74329800-74344400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:74330000-74339800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:74330000-74344400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:74330400-74339400	Weak transcription	Gastric	stomach
11	chr5:74330400-74340400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:74330400-74341800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:74330400-74344200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr5:74330600-74337200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr5:74330600-74339400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:74330600-74339400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:74330600-74339600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:74330600-74339600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:74330600-74341800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:74330600-74342600	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:74330600-74345400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:74330600-74348000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr5:74331400-74345400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:74331400-74345600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr5:74331600-74339800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr5:74331600-74344000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr5:74331600-74347000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr5:74332600-74340400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr5:74332600-74343200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr5:74332800-74338400	Weak transcription	Esophagus	oesophagus
31	chr5:74332800-74339600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:74333000-74336800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:74333200-74336800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr5:74333200-74337000	Weak transcription	Fetal Intestine Large	intestine
35	chr5:74333200-74337000	Weak transcription	NHLF	lung
36	chr5:74333200-74337200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr5:74333200-74339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr5:74333200-74339800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr5:74333200-74344000	Weak transcription	Osteobl	bone
40	chr5:74333200-74346000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr5:74333400-74337600	Weak transcription	NHDF-Ad	bronchial
42	chr5:74333400-74338200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:74333400-74339200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr5:74333400-74343800	Weak transcription	NH-A	brain
45	chr5:74333400-74344000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr5:74333400-74344000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr5:74333600-74335400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr5:74333600-74335800	Weak transcription	Thymus	Thymus
49	chr5:74333600-74336800	Weak transcription	NHEK	skin
50	chr5:74333600-74337000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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