Variant report

Variant	rs62369674
Chromosome Location	chr5:16510049-16510050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16868708	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16868712	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16868714	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16868716	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16868721	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17540822	0.82[AMR][1000 genomes]
rs56398604	0.91[EUR][1000 genomes]
rs62369676	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62369678	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62369679	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62369680	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62369681	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62369682	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62369683	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369684	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369685	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369686	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369709	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369710	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62369711	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62369712	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62369713	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62369714	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62369715	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62369717	0.88[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16508800-16511600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr5:16509000-16510600	Enhancers	Placenta	Placenta
3	chr5:16509200-16510200	Enhancers	Fetal Intestine Small	intestine
4	chr5:16509200-16510400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:16509400-16510400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:16509400-16510600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:16509400-16511200	Enhancers	Fetal Intestine Large	intestine
9	chr5:16509400-16513000	Weak transcription	Right Ventricle	heart
10	chr5:16509400-16515600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:16509600-16510200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr5:16509600-16510200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr5:16509600-16510400	Enhancers	HMEC	breast
14	chr5:16509600-16510600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:16509600-16510600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:16509600-16510600	Enhancers	Hela-S3	cervix
17	chr5:16509600-16515600	Weak transcription	Brain Substantia Nigra	brain
18	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:16509800-16513600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:16509800-16521000	Weak transcription	Fetal Heart	heart
21	chr5:16510000-16510400	Weak transcription	Primary T cells from cord blood	blood
22	chr5:16510000-16512000	Weak transcription	Left Ventricle	heart

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