Variant report

Variant	rs62369683
Chromosome Location	chr5:16515790-16515791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16515644..16517588-chr5:16520879..16522535,2	K562	blood:
2	chr5:16515644..16518181-chr5:16520879..16523096,2	K562	blood:
3	chr5:16514469..16516231-chr5:16522718..16524786,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10078514	0.81[AMR][1000 genomes]
rs16868708	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16868712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868721	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17540822	0.87[AMR][1000 genomes]
rs56398604	0.88[EUR][1000 genomes]
rs62369674	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369676	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62369678	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369679	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62369680	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62369681	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369682	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62369685	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62369686	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62369709	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62369710	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369711	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369712	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369713	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369714	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369715	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62369717	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7445624	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:16509800-16521000	Weak transcription	Fetal Heart	heart
4	chr5:16511200-16519200	Weak transcription	Fetal Intestine Large	intestine
5	chr5:16511600-16522000	Weak transcription	Primary T cells from cord blood	blood
6	chr5:16511800-16519000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:16512000-16519000	Weak transcription	Fetal Intestine Small	intestine
8	chr5:16513200-16519200	Weak transcription	Left Ventricle	heart
9	chr5:16513200-16519800	Weak transcription	Right Ventricle	heart
10	chr5:16513400-16517000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:16514800-16516000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:16515200-16516400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:16515600-16515800	Enhancers	Brain Angular Gyrus	brain
14	chr5:16515600-16516000	Enhancers	Brain Substantia Nigra	brain
15	chr5:16515600-16517000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr5:16515600-16519200	Weak transcription	Rectal Mucosa Donor 31	rectum

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