Variant report

Variant	rs62369717
Chromosome Location	chr5:16520678-16520679
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16519929..16521651-chr5:16530400..16531956,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16868708	0.86[EUR][1000 genomes]
rs16868712	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16868714	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16868716	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16868721	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62369674	0.88[EUR][1000 genomes]
rs62369676	0.86[EUR][1000 genomes]
rs62369678	0.88[EUR][1000 genomes]
rs62369679	0.84[EUR][1000 genomes]
rs62369680	0.86[EUR][1000 genomes]
rs62369681	0.88[EUR][1000 genomes]
rs62369682	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62369683	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62369684	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62369685	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62369686	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62369709	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62369710	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62369711	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62369712	0.92[EUR][1000 genomes]
rs62369713	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62369714	0.92[EUR][1000 genomes]
rs62369715	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:16509800-16521000	Weak transcription	Fetal Heart	heart
4	chr5:16511600-16522000	Weak transcription	Primary T cells from cord blood	blood
5	chr5:16516000-16540800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:16519200-16521200	Enhancers	Fetal Intestine Large	intestine
7	chr5:16519400-16521400	Enhancers	Pancreas	Pancrea
8	chr5:16519400-16523200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:16519600-16520800	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr5:16519800-16522600	Enhancers	Right Atrium	heart
11	chr5:16519800-16531400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:16520000-16521000	Enhancers	Duodenum Mucosa	Duodenum
13	chr5:16520000-16524000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:16520200-16522400	Enhancers	Stomach Mucosa	stomach
15	chr5:16520200-16524000	Weak transcription	Brain Substantia Nigra	brain
16	chr5:16520200-16524200	Weak transcription	Brain Angular Gyrus	brain
17	chr5:16520200-16525000	Weak transcription	Gastric	stomach
18	chr5:16520400-16520800	Enhancers	Fetal Intestine Small	intestine
19	chr5:16520400-16520800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr5:16520400-16521400	Weak transcription	Colonic Mucosa	Colon
21	chr5:16520400-16521400	Weak transcription	Right Ventricle	heart
22	chr5:16520400-16521400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:16520400-16522000	Weak transcription	Left Ventricle	heart
24	chr5:16520400-16523200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr5:16520600-16524800	Weak transcription	Thymus	Thymus

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