Variant report

Variant	rs62382816
Chromosome Location	chr5:167061774-167061775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10058151	1.00[ASN][1000 genomes]
rs11744500	1.00[ASN][1000 genomes]
rs55814675	1.00[ASN][1000 genomes]
rs56111454	1.00[ASN][1000 genomes]
rs6555766	1.00[ASN][1000 genomes]
rs6876801	1.00[ASN][1000 genomes]
rs72819682	1.00[ASN][1000 genomes]
rs72819683	1.00[ASN][1000 genomes]
rs72819696	1.00[ASN][1000 genomes]
rs72819701	1.00[ASN][1000 genomes]
rs72821806	1.00[ASN][1000 genomes]
rs72829393	1.00[ASN][1000 genomes]
rs72830072	1.00[ASN][1000 genomes]
rs72830076	1.00[ASN][1000 genomes]
rs72830077	1.00[ASN][1000 genomes]
rs72830079	1.00[ASN][1000 genomes]
rs72830082	1.00[ASN][1000 genomes]
rs72830084	1.00[ASN][1000 genomes]
rs72830085	1.00[ASN][1000 genomes]
rs72830087	1.00[ASN][1000 genomes]
rs7732135	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167056400-167062200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:167059600-167062600	Enhancers	HSMM	muscle
3	chr5:167059600-167062600	Enhancers	NHDF-Ad	bronchial
4	chr5:167059800-167062200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167059800-167062400	Enhancers	A549	lung
6	chr5:167059800-167062600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:167060000-167062200	Enhancers	HMEC	breast
8	chr5:167060000-167062400	Enhancers	Osteobl	bone
9	chr5:167060000-167062600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:167060200-167062000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:167060200-167062200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:167060200-167062200	Enhancers	HSMMtube	muscle
13	chr5:167060200-167062200	Enhancers	NH-A	brain
14	chr5:167060400-167062000	Enhancers	Hela-S3	cervix
15	chr5:167060600-167062200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:167060600-167062200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:167060600-167062200	Enhancers	NHLF	lung
18	chr5:167060800-167062600	Enhancers	NHEK	skin
19	chr5:167061000-167066800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:167061200-167065800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:167061200-167065800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:167061200-167066000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:167061400-167062200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:167061400-167065000	Weak transcription	Fetal Lung	lung
25	chr5:167061600-167062000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr5:167061600-167062400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:167061600-167062600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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